Portal release notes

The GlyGen portal was first released on September 14th, 2018. A new update has been released every three to fifth months.

Version 1.8

Main article: Portal release notes/1.8

This version was released April 1st, 2021.

• GlyGen Mapper (ID mapping).
• Event alert.
• New resource and license.
• Added new tools to the header.
• About us and team members' updates.
• New posters in media/portfolio.
• Animated GlyGen logo.
• Supersearch.
• Cell line and tissue data.
• Tracking of IDs (merged, renamed, deleted).
• Scoring of search results.
• Pro integration.
• Site-specific search page.
• Sand Box tool.
• Composition search templates.
• SNFG symbols next to the monosaccharide name in composition search tooltip.
• The back button on the glycan, protein, and motif details page.
• Sand Box tool button from the glycan details page.
• Bug fixing.

Version 1.7

Main article: Portal release notes/1.7

This version was released October 30th, 2020.

• PTM annotations table in protein details.
• List of synthesized Glycans to Enzymes (Proteins) table.
• List of motifs page.
• Gene and protein names.
• Subsumption option for species search on Glycan advanced search page.
• Subsumption option for glycan ID search on Glycan advanced search page.
• Binding Protein search on Glycan advanced search page.
• Glycan Binding Protein section on Glycan details page.
• Covalently Attached Glycan search on Protein advanced search page.
• Bound Glycan search on Protein advanced search page.
• Disease Name search on Protein advanced search page.
• Disease ID search on Protein advanced search page.
• Pubmed ID typeahead support.
• Disease section on the protein details page.
• Glycan Ligands section on the protein details page.
• Mutagenesis table in protein details.
• Glycosylation table with four different categories in protein details.
• Single Nucleotide Variation table with two different categories in protein details.
• Protvista button on multiple tabs of protein details.
• Protvista page with Mutagenesis, Single Nucleotide Variation information.
• Site view page with Mutagenesis, Single Nucleotide Variation information. Also, a new API connected.

• Update to the New Motif list. Replacing GlyTouCan Motif accessions with GlyGen motif list with GlyTouCan Motifs as X-ref's.
• Addition of Motif synonyms.
• Including glycosylation annotation (Protein+PMID+Glycan) on unreported sites from GlyConnect.
• Refined/corrected BioSynthetic enzyme data.
• Addition of new Glycan subtypes (o-fucose, o-mannose).
• Updated glycan images from GlyTouCan.
• New data: Protein+GAGs data from MatrixDB.
• Addition of GlyGen x-ref on GlyConnect protein entry pages.
• Addition of GlyGen x-ref on PubChem compound and PubChem protein pages.
• Addition of new glycans into ChEBI.
• Addition of Mutagenesis data from UniProt
• Addition of PMIDs for SNV data
• GlyGen dataset BCO prefix changed from DSBCO to GLY

Version 1.6

Main article: Portal release notes/1.6

This version was released August 14th, 2020.

• React Migration.
• Text and style updates.
• Four new search cards on the homepage.
• New presentation on the Media page.
• Our papers on the How to Cite page.
• Updated frameworks.
• Informational pages are grouped.
• GlyGen members updates.
• Updated metadata.
• New license resources.

Version 1.5

Main article: Portal release notes/1.5

This version was released January 14th, 2020.

• Isoform Alignment.
• Homolog Alignment.
• New Usecase added in the quick search.
• Composition Search.
• Go ID search.
• PMID search.
• Batch search on advanced protein and glycan search page.
• Multi-select option for amino acids on advanced glycoprotein search.
• Multi-select option for organisms on advanced glycan search.
• Integrate subsumption browser.

Version 1.4

Main article: Portal release notes/1.4

This version was released September 23rd, 2019.

• New "Media" page displays GlyGen presentations, talks, brochures, posters, logos, and templates.
• New "Frameworks" page acknowledgment of libraries and frameworks that used to develop GlyGen.
• New "How to cite" page displays GlyGen publications and citations.
• Sequon data on sequence view.
• Site-Specific page.
• Protvista sequence viewer.
• Search by GO term.
• Add search for pMe structures.
• Cascaded type ahead.
• Compressed file download support.

Version 1.3

Main article: Portal release notes/1.3

This version was released June 10th, 2019.

• Added breadcrumbs on list & detail pages.
• Display of error generated by ajax failure method even if javascript code breaks.
• Global search page is more intuitive now.
• Improved new sequence display with more data and badge.
• Orthologous info on protein detail pages.
• Feedback widget on each dynamic page with contact API.
• Gene location publication and RefSeq summary to protein detail.
• Breadcrumbs lead to a proper search page (eg. Global search page when you come to a List page from there).
• Replaced "No results found" pop-up alert messages with inline alert messages in search pages and quick search.
• Added help tooltip next to each label in search pages.
• Added progress bar to the feedback page.
• Added map image for mobile view in the about us page.
• New team members on the About us page.
• Multiple bug fixes and text changes.

Version 1.2

Main article: Portal release notes/1.2

This version was released March 29th, 2019.

• Changed the 'Found Glycoproteins' section to a table on the glycan detail page.
• The map on the about us page is highlighted four countries with a hover tooltip that involved in GlyGen's project.
• A new team member added to the about us page.
• Added helpful links to find my accession numbers or IDs with hover tooltips under every input field in every search page.
• Added a motif detail page which can be accessed by clicking on one of the motif's links in the glycan detail page.
• Implementation of global search functionality.
• Added links on the disclaimer, privacy_policy pages to GitHub explaining how we tracking user activity.
• Updated Evidence display by adding color badge with the data number.
• A new "GlyGen Funding" section on the about us page.
• The blue border around the selected question in the quick search page indicates that the user came from the home page.

Version 1.1

Main article: Portal release notes/1.1

This version was released December 7th, 2018.

• Added summary table for quick search results.
• Added protein sequence highlight tool on protein detail pages.
• Created simple search, advanced search, and tutorials for glycan, protein, and glycoprotein searches.
• Added download button with an option in various formats on List and Detail pages.
• Dynamic display of statistics and version info on the homepage.
• Created clickable text examples for search pages.
• Improved error handling.
• Added link to the Beta server to the header.
• Several text updates, bug fixes, and improvements.

Version 1.0

Main article: Portal release notes/1.0

This version was released September 14th, 2018.

• The initial release of the GlyGen portal.
• GlyGen Portal available with three Protein and Glycan and Glycoprotein advanced search pages.
• Result of searches is available in Protein and Glycan and Glycoprotein list pages.
• Each list page provides details of Protein and Glycan available with one click on accession.