Portal release notes: Difference between revisions

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The GlyGen portal was first released on September 14th, 2018. A new update has been released every three to fifth months.
The GlyGen portal was first released on September 14th, 2018. A new update has been released every three to fifth months.
== Version 1.8 ==
{{main|Portal release notes/1.8}}
This version was released March 15th, 2021.
* GlyGen Mapper (ID mapping).
* Event alert.
* New resource and license.
* Added new tools to the header.
* About us and team members' updates.
* New posters in media/portfolio.
* Animated GlyGen logo.
* Supersearch.
* Cell line and tissue data.
* Tracking of IDs (merged, renamed, deleted).
* Scoring of search results.
* Pro integration.
* Site-specific search page.
* Sand Box tool.
* Composition search templates.
* SNFG symbols next to the monosaccharide name in composition search tooltip.
* The back button on the glycan, protein, and motif details page.
* Sand Box tool button from the glycan details page.
* Bug fixing.


== Version 1.7 ==
== Version 1.7 ==
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* Disease ID search on Protein advanced search page.
* Disease ID search on Protein advanced search page.
* Pubmed ID typeahead support.
* Pubmed ID typeahead support.
* Disease section on protein details page.
* Disease section on the protein details page.
* Glycan Ligands section on protein details page.
* Glycan Ligands section on the protein details page.
* Mutagenesis table in protein details.
* Mutagenesis table in protein details.
* Glycosylation table with four different categories in protein details.
* Glycosylation table with four different categories in protein details.
* Single Nucleotide Variation table with two different categories in protein details.
* Single Nucleotide Variation table with two different categories in protein details.
* Protvista button on multiple tab of protein details.
* Protvista button on multiple tabs of protein details.
* Protvista page with Mutagenesis, Single Nucleotide Variation information.
* Protvista page with Mutagenesis, Single Nucleotide Variation information.
* Siteview page with Mutagenesis, Single Nucleotide Variation information. Also, a new API connected.
* Site view page with Mutagenesis, Single Nucleotide Variation information. Also, a new API connected.


== Version 1.6 ==
== Version 1.6 ==
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* React Migration.
* React Migration.
* Text and style updates.
* Text and style updates.
* Four new search cards in homepage.
* Four new search cards on the homepage.
* New presentation in Media page.
* New presentation on the Media page.
* Our papers in How to Cite page.
* Our papers on the How to Cite page.
* Updated frameworks.
* Updated frameworks.
* Informational page are grouped.
* Informational pages are grouped.
* GlyGen members updates.
* GlyGen members updates.
* Updated metadata.
* Updated metadata.
Line 79: Line 102:
* Gene location publication and RefSeq summary to protein detail.
* Gene location publication and RefSeq summary to protein detail.
* Breadcrumbs lead to a proper search page (eg. Global search page when you come to a List page from there).
* Breadcrumbs lead to a proper search page (eg. Global search page when you come to a List page from there).
* Replaced "No results found" pop up alert messages with inline alert messages in search pages and quick search.
* Replaced "No results found" pop-up alert messages with inline alert messages in search pages and quick search.
* Added help tooltip next to each label in search pages.
* Added help tooltip next to each label in search pages.
* Added progress bar to the feedback page.
* Added progress bar to the feedback page.
* Added map image for mobile view in about us page.
* Added map image for mobile view in the about us page.
* New team members in About us page.
* New team members on the About us page.
* Multiple bags fixes and text changes.
* Multiple bug fixes and text changes.


== Version 1.2 ==
== Version 1.2 ==
Line 90: Line 113:
This version was released March 29th, 2019.
This version was released March 29th, 2019.
* Changed the 'Found Glycoproteins' section to a table on the glycan detail page.
* Changed the 'Found Glycoproteins' section to a table on the glycan detail page.
* The map in the about us page is highlighted four countries with hover tooltip that involved in GlyGen's project.
* The map on the about us page is highlighted four countries with a hover tooltip that involved in GlyGen's project.
* A new team members added to about us page.
* A new team member added to the about us page.
* Added helpful links to find my accession numbers or IDs with hover tooltips under every input field in every search page.
* Added helpful links to find my accession numbers or IDs with hover tooltips under every input field in every search page.
* Added a motif detail page which can be accessed by clicking on one of the motif's links in the glycan detail page.
* Added a motif detail page which can be accessed by clicking on one of the motif's links in the glycan detail page.
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* Added links on the disclaimer, privacy_policy pages to GitHub explaining how we tracking user activity.
* Added links on the disclaimer, privacy_policy pages to GitHub explaining how we tracking user activity.
* Updated Evidence display by adding color badge with the data number.
* Updated Evidence display by adding color badge with the data number.
* A new "GlyGen Funding" section in about us page.
* A new "GlyGen Funding" section on the about us page.
* The blue border around the selected question in the quick search page indicates that user came from the home page.
* The blue border around the selected question in the quick search page indicates that the user came from the home page.


== Version 1.1 ==
== Version 1.1 ==
Line 108: Line 131:
* Added download button with an option in various formats on List and Detail pages.
* Added download button with an option in various formats on List and Detail pages.
* Dynamic display of statistics and version info on the homepage.
* Dynamic display of statistics and version info on the homepage.
* Created clickable text example for search pages.
* Created clickable text examples for search pages.
* Improved error handling.
* Improved error handling.
* Added link to the Beta server to the header.
* Added link to the Beta server to the header.
Line 117: Line 140:
This version was released September 14th, 2018.
This version was released September 14th, 2018.
* The initial release of the GlyGen portal.
* The initial release of the GlyGen portal.
* GlyGen Portal available with three Protein and Glycan and Glycoprotein advanced search page.
* GlyGen Portal available with three Protein and Glycan and Glycoprotein advanced search pages.
* Result of searches is available in Protein and Glycan and Glycoprotein list pages.
* Result of searches is available in Protein and Glycan and Glycoprotein list pages.
* Each list page provides details of Protein and Glycan available with one click on accession.
* Each list page provides details of Protein and Glycan available with one click on accession.

Revision as of 18:17, 8 March 2021

The GlyGen portal was first released on September 14th, 2018. A new update has been released every three to fifth months.

Version 1.8

Main article: Portal release notes/1.8

This version was released March 15th, 2021.

  • GlyGen Mapper (ID mapping).
  • Event alert.
  • New resource and license.
  • Added new tools to the header.
  • About us and team members' updates.
  • New posters in media/portfolio.
  • Animated GlyGen logo.
  • Supersearch.
  • Cell line and tissue data.
  • Tracking of IDs (merged, renamed, deleted).
  • Scoring of search results.
  • Pro integration.
  • Site-specific search page.
  • Sand Box tool.
  • Composition search templates.
  • SNFG symbols next to the monosaccharide name in composition search tooltip.
  • The back button on the glycan, protein, and motif details page.
  • Sand Box tool button from the glycan details page.
  • Bug fixing.

Version 1.7

Main article: Portal release notes/1.7

This version was released October 30th, 2020.

  • PTM annotations table in protein details.
  • List of synthesized Glycans to Enzymes (Proteins) table.
  • List of motifs page.
  • Gene and protein names.
  • Subsumption option for species search on Glycan advanced search page.
  • Subsumption option for glycan ID search on Glycan advanced search page.
  • Binding Protein search on Glycan advanced search page.
  • Glycan Binding Protein section on Glycan details page.
  • Covalently Attached Glycan search on Protein advanced search page.
  • Bound Glycan search on Protein advanced search page.
  • Disease Name search on Protein advanced search page.
  • Disease ID search on Protein advanced search page.
  • Pubmed ID typeahead support.
  • Disease section on the protein details page.
  • Glycan Ligands section on the protein details page.
  • Mutagenesis table in protein details.
  • Glycosylation table with four different categories in protein details.
  • Single Nucleotide Variation table with two different categories in protein details.
  • Protvista button on multiple tabs of protein details.
  • Protvista page with Mutagenesis, Single Nucleotide Variation information.
  • Site view page with Mutagenesis, Single Nucleotide Variation information. Also, a new API connected.

Version 1.6

Main article: Portal release notes/1.6

This version was released August 14th, 2020.

  • React Migration.
  • Text and style updates.
  • Four new search cards on the homepage.
  • New presentation on the Media page.
  • Our papers on the How to Cite page.
  • Updated frameworks.
  • Informational pages are grouped.
  • GlyGen members updates.
  • Updated metadata.
  • New license resources.

Version 1.5

Main article: Portal release notes/1.5

This version was released January 14th, 2020.

  • Isoform Alignment.
  • Homolog Alignment.
  • New Usecase added in the quick search.
  • Composition Search.
  • Go ID search.
  • PMID search.
  • Batch search on advanced protein and glycan search page.
  • Multi-select option for amino acids on advanced glycoprotein search.
  • Multi-select option for organisms on advanced glycan search.
  • Integrate subsumption browser.

Version 1.4

Main article: Portal release notes/1.4

This version was released September 23rd, 2019.

  • New "Media" page displays GlyGen presentations, talks, brochures, posters, logos, and templates.
  • New "Frameworks" page acknowledgment of libraries and frameworks that used to develop GlyGen.
  • New "How to cite" page displays GlyGen publications and citations.
  • Sequon data on sequence view.
  • Site-Specific page.
  • Protvista sequence viewer.
  • Search by GO term.
  • Add search for pMe structures.
  • Cascaded type ahead.
  • Compressed file download support.

Version 1.3

Main article: Portal release notes/1.3

This version was released June 10th, 2019.

  • Added breadcrumbs on list & detail pages.
  • Display of error generated by ajax failure method even if javascript code breaks.
  • Global search page is more intuitive now.
  • Improved new sequence display with more data and badge.
  • Orthologous info on protein detail pages.
  • Feedback widget on each dynamic page with contact API.
  • Gene location publication and RefSeq summary to protein detail.
  • Breadcrumbs lead to a proper search page (eg. Global search page when you come to a List page from there).
  • Replaced "No results found" pop-up alert messages with inline alert messages in search pages and quick search.
  • Added help tooltip next to each label in search pages.
  • Added progress bar to the feedback page.
  • Added map image for mobile view in the about us page.
  • New team members on the About us page.
  • Multiple bug fixes and text changes.

Version 1.2

Main article: Portal release notes/1.2

This version was released March 29th, 2019.

  • Changed the 'Found Glycoproteins' section to a table on the glycan detail page.
  • The map on the about us page is highlighted four countries with a hover tooltip that involved in GlyGen's project.
  • A new team member added to the about us page.
  • Added helpful links to find my accession numbers or IDs with hover tooltips under every input field in every search page.
  • Added a motif detail page which can be accessed by clicking on one of the motif's links in the glycan detail page.
  • Implementation of global search functionality.
  • Added links on the disclaimer, privacy_policy pages to GitHub explaining how we tracking user activity.
  • Updated Evidence display by adding color badge with the data number.
  • A new "GlyGen Funding" section on the about us page.
  • The blue border around the selected question in the quick search page indicates that the user came from the home page.

Version 1.1

Main article: Portal release notes/1.1

This version was released December 7th, 2018.

  • Added summary table for quick search results.
  • Added protein sequence highlight tool on protein detail pages.
  • Created simple search, advanced search, and tutorials for glycan, protein, and glycoprotein searches.
  • Added download button with an option in various formats on List and Detail pages.
  • Dynamic display of statistics and version info on the homepage.
  • Created clickable text examples for search pages.
  • Improved error handling.
  • Added link to the Beta server to the header.
  • Several text updates, bug fixes, and improvements.

Version 1.0

Main article: Portal release notes/1.0

This version was released September 14th, 2018.

  • The initial release of the GlyGen portal.
  • GlyGen Portal available with three Protein and Glycan and Glycoprotein advanced search pages.
  • Result of searches is available in Protein and Glycan and Glycoprotein list pages.
  • Each list page provides details of Protein and Glycan available with one click on accession.
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