Main Page: Difference between revisions
Jump to navigation
Jump to search
mNo edit summary |
(Removed News, added card for structure dictionary and replaced monthly talks with webinar series.) |
||
Line 10: | Line 10: | ||
<div style="clear: both;"></div> | <div style="clear: both;"></div> | ||
<div style="clear: both;"><br /> | <div style="clear: both;"><br /> | ||
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"> | <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"><div id="ggw_row3" style="display: flex; flex-flow: row wrap; justify-content: space-between; padding: 0; margin: 0 -5px 0 -5px;"> | ||
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;"> | <div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;"> | ||
<h3>[[GlyGen | <h3>[[GlyGen Webinar Series]]</h3> | ||
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;"> | <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"> | ||
{{main|GlyGen | {{main|GlyGen Webinar Series}}The GlyGen project organizes public webinars on diverse topics, ranging from bioinformatics databases to new glycomics analysis techniques producing interesting data. Recordings of the talks are released on the GlyGen YouTube channel. | ||
</div> | </div> | ||
</div> | </div> | ||
Line 75: | Line 55: | ||
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;"> | <div style="border-top: 1px solid #CCC; padding-top: 0.5em;"> | ||
{{main|GlyGen triplestore}}The GlyGen knowledgebase uses a Virtuoso triplestore to store GlyGen triples data. The triplestore can be accessed through the GlyGen SPARQL endpoint. | {{main|GlyGen triplestore}}The GlyGen knowledgebase uses a Virtuoso triplestore to store GlyGen triples data. The triplestore can be accessed through the GlyGen SPARQL endpoint. | ||
</div> | |||
</div> | |||
<div style="flex: 1; margin: 5px; min-width: 210px; border: 1px solid #CCC; padding: 0 10px 10px 10px; box-shadow: 0 2px 2px rgba(0,0,0,0.1); background: #f5faff;"> | |||
<h3>[[Glycan structure dictionary|Glycan Structure Dictionary]]</h3> | |||
<div style="border-top: 1px solid #CCC; padding-top: 0.5em;"> | |||
{{main|Glycan structure dictionary}}The Glycan Structure Dictionary has been developed as a reference dictionary to provide a standardized list of widely used glycan terms that can help in the curation and mapping of glycan structures described in publications. | |||
</div> | </div> | ||
</div> | </div> |
Revision as of 13:11, 2 February 2023
GlyGen Webinar Series
GlyGen Portal
The GlyGen portal is the web interface allowing browser based access to the GlyGen data. The portal supports searching for glycans and proteins, display of detailed glycan data and protein data as well as export features to save the data to the local system. The portal also provides access to the other resources of the GlyGen project and digital resources such as posters, presentations and videos.
GlyGen Data Repository
Frequently Asked Questions
The FAQ section contains a list of questions asked by users regarding using the portal, API and SPARQL endpoint as well as questions related to the data, data integration and quality control.
GlyGen Web Service API
https://swagger.io/). Some of these web services are generic and provide searching, listing and detailed record access functionalities for GlyGen data objects, while others are custom designed to respond to specific biological questions or use cases collected from the user community.
The GlyGen APIs allow programmatic access of the GlyGen data objects for glycans, proteins, and glycoproteins in the MongoDB docstore. The GlyGen APIs have been documented using the Swagger framework (GlyGen Triplestore
Glycan Structure Dictionary
External links
- Official
- Glycan search
- Glycan search — Go to GlyGen website to perform Glycan Search
- Simple search
- Advanced search
- Tutorial — Learn how to use simple and advanced searches.
- Protein search
- Protein search — Go to GlyGen website to perform Protein Search
- Simple search
- Advanced search
- Tutorial — Learn how to use Simple and Advanced searches.
- Glycoprotein search
- Glycoprotein search — Go to GlyGen website to perform Glycoprotein Search
- Simple search
- Advanced search
- Tutorial — Learn how to use Simple and Advanced searches.
- Quick search
- Quick search — You can search by glycan, protein, species, and disease.
- Try Me
- Try me — To perform search select one of the frequently asked questions.
- List pages
- Glycan list — GlyTouCan Accession: G17689DH
- Protein list — UniProtKB Accession: P14210-1
- Glycoprotein list — UniProtKB Accession: P14210-1
- Detail pages
- Glycan details — GlyTouCan Accession: G17689DH
- Protein details — UniProtKB Accession: P14210-1
- Glycoprotein details — UniProtKB Accession: P14210-1