Data release notes/1.8.22
Related API version: 1.5.43
This version was released at April 1st, 2021
Change list
- F protein (P0C045-1) was removed from Hepatitis C virus (genotype 1a, isolate H) proteome
- Hepatitis C Virus (genotype 1a, isolate H) Tax ID changed from 11108 to 63746.
- NCBI GeneID and Refseq datasets for SARS-CoV2 created
- Accession history files created for tracking protein and glycan accessions
- Mouse and rat disease datasets created to add disease data in the disease section
- Data entries for O-GlcNAc data now point to The O-GlcNAc resource instead of the dataset.
- human_proteoform_glycosylation_sites_o_glcnac_mcw updated with new O-GlcNAc data
- n-sequon and n-sequon type fields added to the glycosylation datasets for data validation
- Removed predicted glycosylation data from the UniProtKB data when reported glycosylation data is present for the same data entry.
- Update to the Glycomotif alignment logic, motif keyword, publications
- Update to the GlyConnect data, Automatic Literature Data, Disease data from Genomics England
- Update to the GlyTouCan to ChEBI mapping method.
- Addition of new glycan type and subtypes
- Integration of GlycoTree alignment infrastructure
- addition of semantic names from GlycoMotif
- Addition of ~1800 new GlyTouCan accessions
- Addition of new sections in glycan detail pages:
- subsumption(related glycans through GNOme)
- expression(glycans expressed in cell-line/Tissue)
- History (release no. where the glycan was introduced in GlyGen)
- Addition of glycan keywords (Motif Group), Synonyms, Reducing End information to the Motif detail page.
- Addition of citations from NCFG data for Asparagine-linked glycans
- Addition of GNOme and SandBox references
- Addition of Disease data from Glycosmos
- Addition of evidence to the "Biosynthetic Enzyme" section on the glycan detail page.
- Addition of Rhea and Reactome cross-references to glycan detail pages
- Addition of GlyGen links in ChEBI and GlyTouCan databases.