Data release notes/1.8.22

Related API version: 1.5.43

This version was released at April 1st, 2021

Change list

• F protein (P0C045-1) was removed from Hepatitis C virus (genotype 1a, isolate H) proteome
• Hepatitis C Virus (genotype 1a, isolate H) Tax ID changed from 11108 to 63746.
• NCBI GeneID and Refseq datasets for SARS-CoV2 created
• Accession history files created for tracking protein and glycan accessions
• Mouse and rat disease datasets created to add disease data in the disease section
• Data entries for O-GlcNAc data now point to The O-GlcNAc resource instead of the dataset.
• human_proteoform_glycosylation_sites_o_glcnac_mcw updated with new O-GlcNAc data
• n-sequon and n-sequon type fields added to the glycosylation datasets for data validation
• Removed predicted glycosylation data from the UniProtKB data when reported glycosylation data is present for the same data entry.
• Update to the Glycomotif alignment logic, motif keyword, publications
• Update to the GlyConnect data, Automatic Literature Data, Disease data from Genomics England
• Update to the GlyTouCan to ChEBI mapping method.
• Addition of new glycan type and subtypes
• Integration of GlycoTree alignment infrastructure
• addition of semantic names from GlycoMotif
• Addition of ~1800 new GlyTouCan accessions
• Addition of new sections in glycan detail pages:
  • subsumption(related glycans through GNOme)
  • expression(glycans expressed in cell-line/Tissue)
  • History (release no. where the glycan was introduced in GlyGen)
• Addition of glycan keywords (Motif Group), Synonyms, Reducing End information to the Motif detail page.
• Addition of citations from NCFG data for Asparagine-linked glycans
• Addition of GNOme and SandBox references
• Addition of Disease data from Glycosmos
• Addition of evidence to the "Biosynthetic Enzyme" section on the glycan detail page.
• Addition of Rhea and Reactome cross-references to glycan detail pages
• Addition of GlyGen links in ChEBI and GlyTouCan databases.