Data release notes/1.8.22

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Related API version: 1.5.43

This version was released at April 1st, 2021

Change list

  • F protein (P0C045-1) was removed from Hepatitis C virus (genotype 1a, isolate H) proteome
  • Hepatitis C Virus (genotype 1a, isolate H) Tax ID changed from 11108 to 63746.
  • NCBI GeneID and Refseq datasets for SARS-CoV2 created
  • Accession history files created for tracking protein and glycan accessions
  • Mouse and rat disease datasets created to add disease data in the disease section
  • Data entries for O-GlcNAc data now point to The O-GlcNAc resource instead of the dataset.
  • human_proteoform_glycosylation_sites_o_glcnac_mcw updated with new O-GlcNAc data
  • n-sequon and n-sequon type fields added to the glycosylation datasets for data validation
  • Removed predicted glycosylation data from the UniProtKB data when reported glycosylation data is present for the same data entry.
  • Update to the Glycomotif alignment logic, motif keyword, publications
  • Update to the GlyConnect data, Automatic Literature Data, Disease data from Genomics England
  • Update to the GlyTouCan to ChEBI mapping method.
  • Addition of new glycan type and subtypes
  • Integration of GlycoTree alignment infrastructure
  • addition of semantic names from GlycoMotif
  • Addition of ~1800 new GlyTouCan accessions
  • Addition of new sections in glycan detail pages:
    • subsumption(related glycans through GNOme)
    • expression(glycans expressed in cell-line/Tissue)
    • History (release no. where the glycan was introduced in GlyGen)
  • Addition of glycan keywords (Motif Group), Synonyms, Reducing End information to the Motif detail page.
  • Addition of citations from NCFG data for Asparagine-linked glycans
  • Addition of GNOme and SandBox references
  • Addition of Disease data from Glycosmos
  • Addition of evidence to the "Biosynthetic Enzyme" section on the glycan detail page.
  • Addition of Rhea and Reactome cross-references to glycan detail pages
  • Addition of GlyGen links in ChEBI and GlyTouCan databases.