Protein details/Single nucleotide variation: Difference between revisions

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The Phosphorylation section of the Protein details page in GlyGen provides the detailed list of phosphorylation sites and kinase proteins responsible for phosphorylation.
The single nucleotide variation section of the [[Protein details]] page in GlyGen provides a detailed list of somatic and germline nucleotide mutations.


Single nucleotide variation is presented in GlyGen portal in tables in two different tabs of the Single Nucleotide Variation section. These are most commonly nonsynonymous mutations which cause a different amino acid to be produced at a given position.
== Single Nucleotide Variation ==
Single nucleotide variation is presented in 2 tabs on the [[Protein details]] page in GlyGen.
 
=== Disease associated Mutations ===
This tab shows a list of mutations in the genetic sequence that are associated with a disease. The following columns are presented in the table:
 
* '''Source''' -
* '''Filter''' '''annotations''' -
* '''Genomic locus''' -
* '''Start Pos.''' -
* '''End Pos.''' -
* '''Sequence''' -
* '''Disease''' -
* '''MAF''' -
 
=== Non-disease associated Mutations ===
This tab shows a list of mutations in the genetic sequence that are associated with a disease. The following columns are presented in the table:
 
* '''Source''' -
* '''Filter annotations''' -
* '''Genomic locus''' -
* '''Start Pos.''' -
* '''End Pos.''' -
* '''Sequence''' -
* '''MAF''' -
 
== Source of information ==
 
== Data access ==
 
== Data harmonization ==
 
== Data filtering ==

Revision as of 19:16, 3 December 2021

The single nucleotide variation section of the Protein details page in GlyGen provides a detailed list of somatic and germline nucleotide mutations.

Single Nucleotide Variation

Single nucleotide variation is presented in 2 tabs on the Protein details page in GlyGen.

Disease associated Mutations

This tab shows a list of mutations in the genetic sequence that are associated with a disease. The following columns are presented in the table:

  • Source -
  • Filter annotations -
  • Genomic locus -
  • Start Pos. -
  • End Pos. -
  • Sequence -
  • Disease -
  • MAF -

Non-disease associated Mutations

This tab shows a list of mutations in the genetic sequence that are associated with a disease. The following columns are presented in the table:

  • Source -
  • Filter annotations -
  • Genomic locus -
  • Start Pos. -
  • End Pos. -
  • Sequence -
  • MAF -

Source of information

Data access

Data harmonization

Data filtering

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