Protein details/Function: Difference between revisions
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[[File:Protein Function Screenshot.png|thumb|Screenshot of the Function section on the [[Protein details]] page in GlyGen.]]This section contains the following information: | [[File:Protein Function Screenshot.png|thumb|Screenshot of the Function section on the [[Protein details]] page in GlyGen.]]This section contains the following information: | ||
* '''Function''': Listed function of a protein due to its structural properties, attributed by its amino acid sequence. Information for this is retrieved from UniProtKB database, Gene Summary, Gene RIF, and RefSeq Database. <br /> | *'''Function''': Listed function of a protein due to its structural properties, attributed by its amino acid sequence. Information for this is retrieved from UniProtKB database, Gene Summary, Gene RIF, and NCBI RefSeq Database. <br /> | ||
==Source of information== | ==Source of information== | ||
The function data is collected and integrated from '''[https://www.uniprot.org/ UniProtKB]''' and '''[https://www.ncbi.nlm.nih.gov/ NCBI RefSeq]''' datasets'''.''' | |||
* '''[https://www.uniprot.org/ UniProtKB]''' - biological function annotations for protein accessions taken from the UniProtKB database. | |||
* '''[https://www.ncbi.nlm.nih.gov/ NCBI RefSeq]''' - biological function annotation of genes taken from NCBI RefSeq database. | |||
==Data access== | ==Data access== | ||
The collected data is processed and stored at '''[https://data.glygen.org/ data.glygen.org]''' in the following datasets: | |||
Homo Sapiens (Human) Datasets | |||
* Human Protein Function (UniProtKB; [https://data.glygen.org/GLY_000131 GLY_000131]) | |||
* Human Protein Function (NCBI RefSeq; [https://data.glygen.org/GLY_000133 GLY_000133]) | |||
Hepatitis C Virus Datasets | |||
* HCV1a Protein Function (UniProtKB; [https://data.glygen.org/GLY_000468 GLY_000468]) | |||
* HCV1b Protein Function (UniProtKB; [https://data.glygen.org/GLY_000469 GLY_000469]) | |||
Mus musculus (Mouse) Datasets | |||
* Mouse Protein Function (UniProtKB; [https://data.glygen.org/GLY_000132 GLY_000132]) | |||
* Mouse Protein Function (NCBI RefSeq; [https://data.glygen.org/GLY_000134 GLY_000134]) | |||
Rattus norvegicus (Rat) datasets | |||
* Rat Protein Function (UniProtKB; [https://data.glygen.org/GLY_000247 GLY_000247]) | |||
* Rat Protein Function (NCBI RefSeq; [https://data.glygen.org/GLY_000249 GLY_000249]) | |||
SARS Coronavirus datasets | |||
* SARS-CoV1 Protein Function (UniProtKB; [https://data.glygen.org/GLY_000421 GLY_000421]) | |||
* SARS-CoV2 Protein Function (UniProtKB; [https://data.glygen.org/GLY_000422 GLY_000422]) | |||
==Data harmonization== | ==Data harmonization== | ||
==Data filtering== | ==Data filtering== | ||
Revision as of 17:28, 1 December 2021
The function section of the Protein details page in GlyGen lists reported functions of a protein due to its structural properties, attributed by its amino acid sequence.
Function
This section contains the following information:
- Function: Listed function of a protein due to its structural properties, attributed by its amino acid sequence. Information for this is retrieved from UniProtKB database, Gene Summary, Gene RIF, and NCBI RefSeq Database.
Source of information
The function data is collected and integrated from UniProtKB and NCBI RefSeq datasets.
- UniProtKB - biological function annotations for protein accessions taken from the UniProtKB database.
- NCBI RefSeq - biological function annotation of genes taken from NCBI RefSeq database.
Data access
The collected data is processed and stored at data.glygen.org in the following datasets:
Homo Sapiens (Human) Datasets
- Human Protein Function (UniProtKB; GLY_000131)
- Human Protein Function (NCBI RefSeq; GLY_000133)
Hepatitis C Virus Datasets
- HCV1a Protein Function (UniProtKB; GLY_000468)
- HCV1b Protein Function (UniProtKB; GLY_000469)
Mus musculus (Mouse) Datasets
- Mouse Protein Function (UniProtKB; GLY_000132)
- Mouse Protein Function (NCBI RefSeq; GLY_000134)
Rattus norvegicus (Rat) datasets
- Rat Protein Function (UniProtKB; GLY_000247)
- Rat Protein Function (NCBI RefSeq; GLY_000249)
SARS Coronavirus datasets
- SARS-CoV1 Protein Function (UniProtKB; GLY_000421)
- SARS-CoV2 Protein Function (UniProtKB; GLY_000422)