Protein details/Glycation: Difference between revisions
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This section provides the following information: | This section provides the following information: | ||
*'''Source''' - | *'''Source''' - GlyGen evidence linking to the databases and papers that provided the glycation information | ||
*'''Type''' - | *'''Type''' - Type of glycation. Eg. N-linked | ||
*'''Relation''' - | *'''Relation''' - Relationship to the amino acid residue. Eg. attached | ||
*'''Residue''' - | *'''Residue''' - Amino acid residue of the given protein along with its position. Eg. Asn294 | ||
*'''Note''' - | *'''Note''' - Additional information about the entry such as curation notes, N-linked (Glc) (glycation) lysine, remarks, etc. | ||
==Source of information== | ==Source of information== | ||
The Glycation data is collected and integrated from '''[https://uniprot.org UniProtKB | The Glycation data is collected and integrated from '''[https://uniprot.org UniProtKB]''' databases. | ||
'''[https://uniprot.org UniProtKB]''' - only annotated as glycation in UniProtKB when there is experimental evidence | |||
==Data access== | ==Data access== | ||
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Homo Sapiens (Human) Datasets | Homo Sapiens (Human) Datasets | ||
* Human Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000522 GLY_000522]) | *Human Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000522 GLY_000522]) | ||
Mus musculus (Mouse) Datasets | Mus musculus (Mouse) Datasets | ||
* Mouse Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000523 GLY_000523]) | *Mouse Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000523 GLY_000523]) | ||
Rattus norvegicus (Rat) Datasets | Rattus norvegicus (Rat) Datasets | ||
* Rat Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000524 GLY_000524]) | *Rat Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000524 GLY_000524]) | ||
* | * |
Revision as of 16:36, 23 November 2021
The glycation section of the Protein information page in GlyGen provides a detailed list of sites with non-enzymatic, covalently linked glucose residues, including the type of attachment and the location on the amino acid sequence.
Glycation
This section provides the following information:
- Source - GlyGen evidence linking to the databases and papers that provided the glycation information
- Type - Type of glycation. Eg. N-linked
- Relation - Relationship to the amino acid residue. Eg. attached
- Residue - Amino acid residue of the given protein along with its position. Eg. Asn294
- Note - Additional information about the entry such as curation notes, N-linked (Glc) (glycation) lysine, remarks, etc.
Source of information
The Glycation data is collected and integrated from UniProtKB databases.
UniProtKB - only annotated as glycation in UniProtKB when there is experimental evidence
Data access
The collected data is processed and stored at data.glygen.org in the following datasets:
Homo Sapiens (Human) Datasets
- Human Glycation Sites (UniProtKB; GLY_000522)
Mus musculus (Mouse) Datasets
- Mouse Glycation Sites (UniProtKB; GLY_000523)
Rattus norvegicus (Rat) Datasets
- Rat Glycation Sites (UniProtKB; GLY_000524)
Data harmonization
This section needs expansion. You can help by adding to it. |
Data filtering
This section needs expansion. You can help by adding to it. |