Protein details/Phosphorylation: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
No edit summary |
||
Line 14: | Line 14: | ||
The Phosphorylation data is collected and integrated from '''[https://uniprot.org UniProtKB]''', '''[https://pubmed.ncbi.nlm.nih.gov/ PubMed]''', and '''[https://research.bioinformatics.udel.edu/iptmnet/ iPTMnet]''' databases. | The Phosphorylation data is collected and integrated from '''[https://uniprot.org UniProtKB]''', '''[https://pubmed.ncbi.nlm.nih.gov/ PubMed]''', and '''[https://research.bioinformatics.udel.edu/iptmnet/ iPTMnet]''' databases. | ||
{{Expand section|small=no}} | |||
==Data access== | ==Data access== |
Revision as of 14:50, 22 November 2021
The Phosphorylation section of the Protein information page in GlyGen provides the detailed list of phosphorylation sites and kinase proteins responsible for phosphorylation.
Phosphorylation
This section provides the following information:
- Source - Evidence linking to the databases and papers that provided the phosphorylation information.
- Kinase Protein - GlyGen ID of the enzyme responsible for catalyzing the covalent addition of a phosphate group to the protein. Eg. Q6P1J9-1
- Kinase Gene - Name of the gene that encodes the kinase protein. Eg. CDC73
- Residue - Residue on which phosphorylation occurs by kinase protein; commonly occurs on amino acids serine and threonine, and occasionally tyrosine. Eg. Ser322
- Notes - Additional information about the entry such as curation notes, phosphorylation subtype, remarks, etc.
Source of information
The Phosphorylation data is collected and integrated from UniProtKB, PubMed, and iPTMnet databases.
This section needs expansion. You can help by adding to it. |
Data access
The collected data is processed and stored in data.glygen.org in following datasets.
Homo Sapiens (Human) Datasets
- Human Phosphorylation Sites (UniProtKB; GLY_000274)
- Human Phosphorylation Sites (iPTMNet; GLY_000519)
Hepatitis C Virus Datasets
- HCV1a Phosphorylation Sites (UniProtKB; GLY_000384)
- HCV1b Phosphorylation Sites (UniProtKB; GLY_000385)
SARS Coronavirus Datasets
- SARS-CoV1 Phosphorylation Sites (UniProtKB; GLY_000474)
- SARS-CoV2 Phosphorylation Sites (UniProtKB; GLY_000475)
Mus musculus (Mouse) Datasets
- Mouse Phosphorylation Sites (UniProtKB; GLY_000254)
- Mouse Phosphorylation Sites (iPTMNet; GLY_000520)
Rattus norvegicus (Rat) Datasets
- Rat Phosphorylation Sites (UniProtKB; GLY_000231)
- Rat Phosphorylation Sites (iPTMnet; GLY_000521)
Data harmonization
Data filtering