Protein details/Glycation: Difference between revisions
Jump to navigation
Jump to search
No edit summary |
|||
(7 intermediate revisions by 2 users not shown) | |||
Line 1: | Line 1: | ||
The | The Glycation section of the [[Protein details]] page in GlyGen provides a detailed list of sites with non-enzymatic, covalently linked glucose residues, including the type of attachment and the location on the amino acid sequence. | ||
==Glycation== | ==Glycation== | ||
Line 5: | Line 5: | ||
This section provides the following information: | This section provides the following information: | ||
* '''Source''' - | *'''Source''' - GlyGen evidence linking to the databases and papers that provided the glycation information | ||
* '''Type''' - | *'''Type''' - Type of glycation. Eg. N-linked | ||
* '''Relation''' - | *'''Relation''' - Relationship to the amino acid residue. Eg. attached | ||
* '''Residue''' - | *'''Residue''' - Amino acid residue of the given protein along with its position. Eg. Asn294 | ||
* '''Note''' - | *'''Note''' - Additional information about the entry such as curation notes, N-linked (Glc) (glycation) lysine, remarks, etc. | ||
==Source of information== | ==Source of information== | ||
The Glycation data is collected and integrated from '''[https://uniprot.org UniProtKB]''' databases. | |||
'''[https://uniprot.org UniProtKB]''' - only annotated as glycation in UniProtKB when there is experimental evidence | |||
==Data access== | ==Data access== | ||
The collected data is processed and stored at '''data.glygen.org''' in the following datasets: | |||
Homo Sapiens (Human) Datasets | |||
*Human Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000522 GLY_000522]) | |||
Mus musculus (Mouse) Datasets | |||
*Mouse Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000523 GLY_000523]) | |||
Rattus norvegicus (Rat) Datasets | |||
*Rat Glycation Sites (UniProtKB; [https://data.glygen.org/GLY_000524 GLY_000524]) | |||
* | |||
==Data harmonization== | ==Data harmonization== | ||
{{Expand section|small=no}} | |||
==Data filtering== | ==Data filtering== | ||
{{Expand section|small=no}} |
Latest revision as of 15:17, 9 December 2021
The Glycation section of the Protein details page in GlyGen provides a detailed list of sites with non-enzymatic, covalently linked glucose residues, including the type of attachment and the location on the amino acid sequence.
Glycation
![](/images/thumb/5/5e/Protein_Glycation_Screenshot.png/300px-Protein_Glycation_Screenshot.png)
This section provides the following information:
- Source - GlyGen evidence linking to the databases and papers that provided the glycation information
- Type - Type of glycation. Eg. N-linked
- Relation - Relationship to the amino acid residue. Eg. attached
- Residue - Amino acid residue of the given protein along with its position. Eg. Asn294
- Note - Additional information about the entry such as curation notes, N-linked (Glc) (glycation) lysine, remarks, etc.
Source of information
The Glycation data is collected and integrated from UniProtKB databases.
UniProtKB - only annotated as glycation in UniProtKB when there is experimental evidence
Data access
The collected data is processed and stored at data.glygen.org in the following datasets:
Homo Sapiens (Human) Datasets
- Human Glycation Sites (UniProtKB; GLY_000522)
Mus musculus (Mouse) Datasets
- Mouse Glycation Sites (UniProtKB; GLY_000523)
Rattus norvegicus (Rat) Datasets
- Rat Glycation Sites (UniProtKB; GLY_000524)
Data harmonization
This section needs expansion. You can help by adding to it. |
Data filtering
This section needs expansion. You can help by adding to it. |