Release notes

Version 2.6

This version was released on August 30th, 2024.

Implemented 3D structure display of Alphafold and PDB structures on Protein details page.
Added 3D file download support for glycan and protein pdb files.
Implemented support for highlighting consensus sequences on protein sequences viewer.
Implemented GlyGen Isoform Mapper functionality.
Modified Sequence Viewer to display protein sequence in a user-friendly manner.
Added support for Arabidopsis on Glycan, Protein, Quick Search, Publication details and search pages.
Added reducing end monosaccharides to GlyTouCan structures.
Updated xref badges for user-submitted data.
Carbbank data.
Added PRIDE Cross-reference to Protein details page.
Bug fixing.

This version was released on June 1st, 2024.

Implemented Biomarker search, list and details pages.
Added support for Chicken on Glycan, Protein, Quick search, Publication details and search pages.
Biomarker table download supported from Protein, Glycan, Publication and Motif details pages.
Implemented direct search from Motif list and Glycan list pages.
Bug fixing.

This version was released on April 1st, 2024.

This version was released on January 22nd, 2024.

Implemented Glycan Highlighting Widget for Glycan details page.
Implemented motif highlighting on Motif details page.
Implemented outreach page.
ProtVista page improvements.
Categorized databases on Cross Reference section of Protein and Glycan details pages.
Added support for scheduling GlyGen demo from home page.

Bug fixing.
New datasets for Slime Mold (Dictyostelium discoideum) added (GLY_000823, ...).
Glycan, Protein and Proteoform datasets updated for the current organisms in GlyGen.
Added new records from literature mining of 30k publications (GLY_000481, GLY_000492).
New supporting JSON files for glymagesvg semantic highlighting (GLY_000821).
New datasets on disease information for Yeast and Fruitfly from Alliance of Genome Resources added.

This version was released on October 2nd, 2023.

Implemented server side pagination for tables in protein, glycan and publication details pages.
Added biomarker data to the GlyGen portal.
Added Yeast (Saccharomyces cerevisiae) data to GlyGen portal and datasets to data.glygen.org.
Changed organism names to match with NCBI Taxonomy names on GlyGen and GlyGen Data portal. (Sars coronavirus (sars-cov-1) to Severe acute respiratory syndrome-related coronavirus, Sars coronavirus (sars-cov-2 or 2019-ncov) to Severe acute respiratory syndrome coronavirus 2, Hepatitis c virus (genotype 1a, isolate h) to Hepatitis c virus (isolate h) and Hepatitis c virus (genotype 1b, isolate japanese) to Hepatitis c virus (isolate japanese).
Added ViralGlycome Cross-reference for SARS-CoV2 to protein details page.
Added CFDE submitted datasets and EuropePMC Linkout datasets.
Added Mastodon widget in the News section of GlyGen portal.
Updated grant information and added CFDE and GSA links on GlyGen portal.
Updated Glycan, Protein and Proteoform datasets.
Updated Biomarker datasets.
Datasets for CFDE (submitted) and EuropePMC linkouts created and added to data.glygen.org.
Added new disease, tissue and cell line expression records to glycan details page.
Glycan abundance data added to publication details page.
New GlycoCT{xml} dataset added to data.glygen.org (GLY_000817).
Addition of Yeast, Dictyostelium and Pig glycan species annotations.
Bug fixing.

This version was released on July 3rd, 2023.

Download icon for tabular data section (all pages).
Send filter as part of download request on list pages.
Download API changes on list and details pages.
Change Opacity, Size of carbohydrates in 3d glycan structures.
"Please wait" icon for all downloads.
Integrate Nathans Sandbox links into frontend.
Update Raja's Photo in About page.
3D structures not visible on beta.
Updated Glycan, Protein and Proteoform datasets.
Removal of SNV/mutation entries from COSMIC resource from the human_protein_mutation_cancer.csv dataset [GLY_000024].
Updated SPARQL endpoint with newer data.
New interface and search functionality on data.glygen.org.
Bug fixing.

This version was released on April 12th, 2023.

Protein and Glycan datasets updated with new release data
O-GlcNAc data added from O-GlcNAc atlas (GLY_000708, GLY_000709, GLY_000710, GLY_000711).
O-Glucosylation data added from the dataset shared from the lab of Robert S Haltiwanger by Daniel Williamson (author) (GLY_000716).
Glyconnect cross-references datasets created and added to the GlyGen Mapper tool.
Glycan Structure Dictionary dataset updated GLY_000557.
SNV/ cancer mutation data from OncoMX was updated. The new data is as per genome assembly reference GRCh38.
Names of few citations files changed. Missing citations files were created.
Addition of new monosaccharides.
Addition of biomarker data to data.glygen.org (Glycan - GLY_000737 | Protein - GLY_000625)
Migration to recent React Framework.
3D structure viewer for Glycans.
N-Glycan Gnome Browser integration.
Update About us page.
Update menu structure.
BLAST Improvements.
BLAST and GSD on Homepage.
Accession history error messages.
Bug fixing.