API release notes

In addition to the browser-based interface, GlyGen also provides RESTful Glygen webservice-based APIs and SPARQL endpoints, allowing programmatic access to integrated datasets.

Version 1.8

Added information from Data Version 1.8.22

F protein (P0C045-1) was removed from Hepatitis C virus (genotype 1a, isolate H) proteome
Hepatitis C Virus (genotype 1a, isolate H) Tax ID changed from 11108 to 63746.
NCBI GeneID and Refseq datasets for SARS-CoV2 created
Accession history files created for tracking protein and glycan accessions
Mouse and rat disease datasets created to add disease data in the disease section
Data entries for O-GlcNAc data now point to The O-GlcNAc resource instead of the dataset.
human_proteoform_glycosylation_sites_o_glcnac_mcw updated with new O-GlcNAc data
n-sequon and n-sequon type fields added to the glycosylation datasets for data validation
Removed predicted glycosylation data from the UniProtKB data when reported glycosylation data is present for the same data entry.
Update to the Glycomotif alignment logic, motif keyword, publications
Update to the GlyConnect data, Automatic Literature Data, Disease data from Genomics England
Update to the GlyTouCan to ChEBI mapping method.
Addition of new glycan type and subtypes
Integration of GlycoTree alignment infrastructure
addition of semantic names from GlycoMotif
Addition of ~1800 new GlyTouCan accessions
Addition of new sections in glycan detail pages:
- subsumption(related glycans through GNOme)
- expression(glycans expressed in cell-line/Tissue)
- History (release no. where the glycan was introduced in GlyGen)
Addition of glycan keywords (Motif Group), Synonyms, Reducing End information to the Motif detail page.
Addition of citations from NCFG data for Asparagine-linked glycans
Addition of GNOme and SandBox references
Addition of Disease data from Glycosmos
Addition of evidence to the "Biosynthetic Enzyme" section on the glycan detail page.
Addition of Rhea and Reactome cross-references to glycan detail pages
Addition of GlyGen links in ChEBI and GlyTouCan databases.

Version 1.7.12

Added information from Data Version 1.7.13

Update to the New Motif list. Replacing GlyTouCan Motif accessions with GlyGen motif list with GlyTouCan Motifs as X-ref's.
Addition of Motif synonyms.
Including glycosylation annotation (Protein+PMID+Glycan) on unreported sites from GlyConnect.
Refined/corrected BioSynthetic enzyme data.
Addition of new Glycan subtypes (o-fucose, o-mannose).
Updated glycan images from GlyTouCan.
New data: Protein+GAGs data from MatrixDB.
Addition of GlyGen x-ref on GlyConnect protein entry pages.
Addition of GlyGen x-ref on PubChem compound and PubChem protein pages.
Addition of new glycans into ChEBI.
Addition of Mutagenesis data from UniProt
Addition of PMIDs for SNV data
GlyGen dataset BCO prefix changed from DSBCO to GLY

Version 1.5.43

Added information from Data Version 1.5.36

Update to the New Motif list. Replacing GlyTouCan Motif accessions with GlyGen motif list with GlyTouCan Motif's as X-ref's
Including glycosylation annotation (Protein+PMID+Glycan) on unreported sites from GlyConnect.
Refined/corrected BioSynthetic enzyme data.

Version 1.5.26

Added information from Data Version 1.5.18

No update for API only.

Version 1.0

This version was released January 14th, 2020.

Isoform Alignment.
Homolog Alignment.
New Usecase added in the quick search.
Composition Search.
Go ID search.
PMID search.
Batch search on advanced protein and glycan search page.
Multi-select option for amino acids on advanced glycoprotein search.
Multi-select option for organisms on advanced glycan search.
Integrate subsumption browser.