GlyGen 2024 All Hands Meeting

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The annual GlyGen All Hands meeting is scheduled for Wednesday and Thursday, June 12th and 13th, 2024. It is an exciting opportunity for all GlyGen collaborators to convene in person and dive into discussions about our future prospects and project plans for the upcoming year.


Program and Information

Meeting Venue

Suite G1 - Innovation Center for Biomedical Informatics, Georgetown University (Map) (Parking)

Day 1 Wednesday June 12 - Suite G1

Day 2 Thursday June 13 - Suite G1

Parking is at Colonial Parking - 2115 and 2121 Wisconsin Ave NW, Washington, DC 20007. The parking ticket will be validated. Contact Jeet Vora.

Accommodation - Closet Hotel to the venue is the The Glover Park Hotel in Glover Park. Other hotels are in Georgetown and Foggy Bottom which are a short ride from the venue.

For entering the building ID is required. In the morning, GW members will be in the courtyard or near the security desk to sign you in and hand out your badges.

For any assistance call Karina (804-868-0809) or (Raja (703-608-9785) or Jeet (202-816-0104)

Travel from DCA or IAD Airport:

The accommodation and meeting venue near/in Georgetown/Glover Park is approximately 7 miles away from Ronald Reagan National Airport (DCA) and 27 Miles from Dulles International Airport (IAD). A taxi ride should take around 20 minutes from DCA and 50 Minutes from IAD.

There is no Metro station near the venue. The closest Metro station is Foggy Bottom (2 miles away). The Metrorail Blue line connects the DCA airport and the Foggy Bottom Station, in direction of Largo Town Center. There is a Silver line metro that directly connects IAD Dulles Airport Station to Foggy Bottom Station, in direction of Largo Town Center) and takes about 60 mins from IAD. (Metro Map , WMATA)

Virtual Meeting

The Zoom Link will be used for the virtual attendees - https://gwu.webex.com/meet/jeetvora

Group Dinner

Group dinner on Day 1 will be at ….There is a … menu for the dinner which will be paid for by GlyGen (details to be finalized).

Alcoholic Drinks - Buy Your Own Drink.

Connecting to the WIFI

GuestNet

GuestNet provides Internet access for visitors, and for other users without NetIDs. The network is also available to current Georgetown students, faculty, staff, and other affiliates.

GU_Visitor

GU_Visitor provides Internet access for visitors at off-campus locations, and for other users without NetIDs. The network is also available to current Georgetown students, faculty, staff, and other affiliates.

GU_Visitor permits access to the Internet only. In order to access Georgetown online services (e.g., Georgetown Google Mail, Box, Canvas), use SaxaNet.

GU_Visitor is password-protected. Users who wish to connect to GU_Visitor should contact an administrative assistant in covered areas for login information.

Eduroam

Georgetown is a member of the Eduroam network, which is comprised of US and international higher education and research institutions.

Access to the Eduroam network is available to visiting students, faculty, and staff from higher education and research institutions that are part of the Eduroam network.

Agenda

Day 1 (Wednesday June 12th) All Hands Meeting

Time (ET) Agenda Description Presenter
8:30am                                                                                                      Breakfast
9:00am Welcome
  • Welcome
  • Individual Introduction
  • Plan for the Meeting
MikeT & Raja (30min)
9:30am NIH Remarks
  • Introductory remarks from NIH Staff
NIH Staff (15 min)
10:20am Year 2 progress
  • Portal (Year 2)
  • Data (Year 2)
MikeT & Raja (20min)
10:40am       Coffee break (20min)
11:00am Tool game/data
  • What tools do we need for GlyGen
  • What data/species do we need for GlyGen
Rene (45 min)
11:45am Portal Year 3 Plan
  • Portal Plans for Year 3
MikeT (20min)
12:05pm Data Year 3 Plan
  • Data Plans for Year 3
Raja (20min)
10:00am GlyGen Year 4 and Year 5 Plans
  • Overall aims for GlyGen for Year 4,5
MikeT & Raja (20min)
12:25pm Open Discussion
  • Discussion Session
All (30min)
12:55pm Photo & Lunch break (60min)
1:55pm Subcontract I - Protein Data
  • Year 2 summary
  • Year 3 Protein Data Plan
  • Publication/Outreach plans
Maria (20min)
2:25pm Subcontract II - Lit. Mining
  • Current Progress Overall Lit Mining Plans
  • Year 3 plans
  • Publication /Outreach plans
Vijay Shanker (20min)
2:45pm Subcontract III - Glycan
  • Year 2 summary
  • Year 3 Glycan Data Plan
  • Publication /Outreach plans
Nathan (20min)
3:05pm GlyGen-PubChem-ChEBI
  • Current status on GlyGen PubChem collaboration
  • Current status on GlyGen ChEBI collaboration
  • Year 2 plans
Nathan, Evan and Karina (20mins)
3:25pm Discussion session
  • Discussion
All (40 min)
3:25pm Coffee break (15mins)
Introduction to GlySpace - What is GlySpace?

- Who is GlySpace Member? - GlySpace Mission, Aims and Goals - GlySpace's Collaboration

Mike and Raja (10min)
GlyGen's proposal for GlyCosmos and GlyConnect data - Data from GlyCosmos

- Data from GlyConnect - Issue and questions (ask Nathan)

Jeet/Urnisha (10min)
3:40pm Collaboration plans between GlyGen and GlyCosmos/GlyTouCan
  • Current status
  • Future plans
  • Grant submission ideas
  • Publications
  • Outreach Plans
Kiyoko (20min)
4:00pm Collaboration plans between GlyGen and GlyConnect/SIB
  • Current status
  • Future plans
  • Grant submission ideas
  • Publications
  • Outreach Plans
Frederique (20 min)
4:20pm Open discussion
  • Discussion
All (20 min)
4:25pm Meeting Adjourned
4:10pm-6pm GlySpace Alliance Meeting Raja, Mike, Kiyoko, Frederique, Rene
6:30pm Group Dinner (details to be added)

Day 2 (Wed June 13th) General

Location - Georgetown

9:00am Welcome
  • Welcome
MikeT & Raja (5min)
9:05am Review day 1
  • Tasks and To-do's
Rene (10min)
9:15am Outreach
  • Status of Year 2 outreach
  • External Meetings
  • Webinars
  • Workshops
  • Talks
  • Google Analytics
Jeet (15min)
10:00am Publication plans
  • Overall Publication Plans
Karina (10min)
9:30am Outreach Workshop
  • Meeting and Conference to attend
  • Activities at these meetings and conference
All (30 min)
10:10am Discussion
  • Discussion
All (20min)
10:30am Coffee break (15 min)
10:45am Machine learning and literature mining in GlyGen(Confirm with Robel and Nathan)
  • Literature Mining Status
  • Machine learning ready datasets
  • New Ideas
Robel & Nathan (30min)
11:15am Open Discussion
  • Discussion
All (45min)
12:00pm Lunch break and (60min)
12:10pm Executive Session with Advisors and NIH Guests, if available (60min)
1:00pm General Meeting adjourned

Day 2 afternoon developers meeting. Agenda ideas are below

- Hardware

-- firewall issues for some applications

-- storage getting filled up

-- system down msg