GlyGen 2024 All Hands Meeting: Difference between revisions
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|'''Presenter''' | |'''Presenter''' | ||
|- | |- | ||
| colspan=" | |'''8:30am''' | ||
| colspan="3" | '''<u>Breakfast</u>''' | |||
|- | |- | ||
|'''9:00am''' | |'''9:00am''' | ||
|'''Welcome''' | |'''Welcome''' | ||
| | | | ||
* Welcome | * Welcome | ||
* Individual Introduction | * Individual Introduction | ||
* Plan for the Meeting | * Plan for the Meeting | ||
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|'''9:30am''' | |'''9:30am''' | ||
|'''NIH Remarks''' | |'''NIH Remarks''' | ||
| | |Introductory remarks from NIH Staff | ||
|NIH Staff (15 min) | |||
|NIH Staff ( | |||
|- | |- | ||
|''' | |'''9:45am''' | ||
|'''Year 2 progress''' | |'''Year 2 progress''' | ||
| | | | ||
* Portal (Year 2) | *Portal (Year 2) | ||
* Data (Year 2) | * Data (Year 2) | ||
|MikeT & Raja ( | |MikeT & Raja (30min) | ||
|- | |- | ||
|'''10: | |'''10:15am''' | ||
| colspan="3" | | | colspan="3" | <u>'''Coffee Break (15min)'''</u> | ||
|- | |- | ||
|''' | |'''10:30am''' | ||
|'''Portal Year 3 Plan''' | |'''Portal Year 3 Plan''' | ||
| | | | ||
* Portal Plans for Year 3 | * Portal Plans for Year 3 | ||
|MikeT ( | |MikeT (15min) | ||
|- | |- | ||
|''' | |'''10:45pm''' | ||
|'''Data Year 3 Plan''' | |'''Data Year 3 Plan''' | ||
| | | | ||
* Data Plans for Year 3 | * Data Plans for Year 3 | ||
|Raja ( | |Raja (15min) | ||
|- | |- | ||
|''' | |'''11:00am''' | ||
|'''GlyGen Year 4 and Year 5 Plans''' | |||
| | |||
* Overall aims for GlyGen for Year 4 and 5 | |||
|MikeT & Raja (15min) | |||
|- | |||
|'''11:15pm''' | |||
|'''Open Discussion''' | |'''Open Discussion''' | ||
| | | | ||
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|All (30min) | |All (30min) | ||
|- | |- | ||
|''' | |'''11:45pm''' | ||
| colspan="3" |'''Photo & Lunch break''' | | colspan="3" | '''<u>Photo & Lunch break (60min)</u>''' | ||
|- | |- | ||
|'''1: | |'''12:45pm''' | ||
|'''Tool game/data''' | |||
| | |||
*What tools do we need for GlyGen | |||
* What data/species do we need for GlyGen | |||
|Rene (45 min) | |||
|- | |||
|'''1:30pm''' | |||
|'''Subcontract I - Protein Data''' | |'''Subcontract I - Protein Data''' | ||
| | | | ||
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|Maria (20min) | |Maria (20min) | ||
|- | |- | ||
|''' | |'''1:50pm''' | ||
|'''Subcontract II - Lit. Mining''' | |'''Subcontract II - Lit. Mining''' | ||
| | | | ||
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|Vijay Shanker (20min) | |Vijay Shanker (20min) | ||
|- | |- | ||
|'''2: | |'''2:10pm''' | ||
|'''Subcontract III - Glycan''' | |'''Subcontract III - Glycan''' | ||
| | | | ||
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|Nathan (20min) | |Nathan (20min) | ||
|- | |- | ||
|''' | |'''2:30pm''' | ||
|'''GlyGen-PubChem-ChEBI''' | |'''GlyGen-PubChem-ChEBI''' | ||
| | | | ||
* Current status on GlyGen PubChem collaboration | * Current status on GlyGen PubChem collaboration | ||
* Current status on GlyGen ChEBI collaboration | * Current status on GlyGen ChEBI collaboration | ||
* Year | * Year 3 plans | ||
|Nathan, Evan and Karina (20mins) | |Nathan, Evan and Karina (20mins) | ||
|- | |- | ||
|''' | |'''2:50pm''' | ||
|'''Discussion session''' | |'''Discussion session''' | ||
| | | | ||
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|All (40 min) | |All (40 min) | ||
|- | |- | ||
|'''3: | |'''3:30pm''' | ||
| colspan="3" |'''Coffee break''' | | colspan="3" | '''<u>Coffee break (10mins)</u>''' | ||
|- | |- | ||
|'''3:40pm''' | |'''3:40pm''' | ||
|'''Introduction to GlySpace''' | |||
| | |||
* What is GlySpace? | |||
* Who is GlySpace Member? | |||
* GlySpace Mission, Aims and Goals | |||
* GlySpace's Collaboration | |||
|Mike and Raja (10min) | |||
|- | |||
|'''3:50pm''' | |||
|'''GlyGen's Data Integration Plan for GlyCosmos and GlyConnect data''' | |||
| | |||
* Data Integration Plan from GlyCosmos | |||
* Data Integration Plan from GlyConnect | |||
* Issues and questions | |||
|Urnisha (10min) | |||
|- | |||
|'''4:20pm''' | |||
|'''Collaboration plans between GlyGen and GlyCosmos/GlyTouCan''' | |'''Collaboration plans between GlyGen and GlyCosmos/GlyTouCan''' | ||
| | | | ||
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|Kiyoko (20min) | |Kiyoko (20min) | ||
|- | |- | ||
|'''4: | |'''4:40pm''' | ||
|'''Collaboration plans between GlyGen and GlyConnect/SIB''' | |'''Collaboration plans between GlyGen and GlyConnect/SIB''' | ||
| | | | ||
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|Frederique (20 min) | |Frederique (20 min) | ||
|- | |- | ||
|''' | |'''5:00pm''' | ||
|'''Open discussion''' | |'''Open discussion''' | ||
| | | | ||
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|All (20 min) | |All (20 min) | ||
|- | |- | ||
|''' | |'''5:20pm''' | ||
| colspan="3" |'''Meeting Adjourned''' | | colspan="3" |'''Meeting Adjourned''' | ||
|- | |- | ||
|'''6:30pm''' | |'''6:30pm''' | ||
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|} | |} | ||
=== '''Day 2 ( | === '''Day 2 (Thursday June 13th) All Hands Meeting''' === | ||
{| class="wikitable" | {| class="wikitable" | ||
|'''8:30am''' | |||
| colspan="3" | '''<u>Breakfast</u>''' | |||
|- | |||
|'''9:00am''' | |'''9:00am''' | ||
|'''Welcome''' | |'''Welcome''' | ||
| | | | ||
* Welcome | * Welcome | ||
* Overview of Day 2 | |||
|MikeT & Raja (5min) | |MikeT & Raja (5min) | ||
|- | |- | ||
|'''9:05am''' | |'''9:05am''' | ||
|'''Review | |'''Review Day 1''' | ||
| | | | ||
* Tasks and To-do's | * Tasks and To-do's | ||
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* Talks | * Talks | ||
* Google Analytics | * Google Analytics | ||
|Jeet ( | |Jeet (20min) | ||
|- | |- | ||
|''' | |'''9:35am''' | ||
|'''Publication plans''' | |'''Publication plans''' | ||
| | | | ||
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|Karina (10min) | |Karina (10min) | ||
|- | |- | ||
|'''10: | |'''9:45am''' | ||
|'''Outreach Workshop''' | |||
| | |||
* Meeting and Conference to attend | |||
* Activities at these meetings and conference | |||
|Rene (30 min) | |||
|- | |||
|'''10:15am''' | |||
|'''Discussion''' | |'''Discussion''' | ||
| | | | ||
* '''Discussion''' | * '''Discussion''' | ||
|All ( | |All (15min) | ||
|- | |- | ||
|'''10:30am''' | |'''10:30am''' | ||
| colspan="3" |Coffee break (15 min) | | colspan="3" | '''<u>Coffee break (15 min)</u>''' | ||
|- | |- | ||
|'''10:45am''' | |'''10:45am''' | ||
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* Machine learning ready datasets | * Machine learning ready datasets | ||
* New Ideas | * New Ideas | ||
|Robel & Nathan(30min) | |Robel & Nathan (30min) | ||
|- | |- | ||
|'''11:15am''' | |'''11:15am''' | ||
|'''How to measure success?''' | |||
| | |||
* Success Metrics for GlyGen | |||
|Rene (30min) | |||
|- | |||
|'''11:45am''' | |||
|'''Open Discussion''' | |'''Open Discussion''' | ||
| | | | ||
* '''Discussion''' | * '''Discussion''' | ||
| | |All (15min) | ||
|- | |- | ||
|'''12: | |'''12:15pm''' | ||
| colspan="3" |'''Lunch break and''' | | colspan="3" | '''<u>Lunch break and (60min)</u>''' | ||
|- | |- | ||
|'''12: | |'''12:45pm''' | ||
| colspan="3" |'''Executive Session with Advisors and NIH Guests, if available''' (60min) | | colspan="3" |'''Executive Session with Advisors and NIH Guests, if available''' (60min) | ||
|- | |- | ||
|'''1: | |'''1:30pm''' | ||
| colspan="3" |'''General Meeting adjourned''' | | colspan="3" | '''<u>General Meeting adjourned</u>''' | ||
|- | |||
|'''1:30pm''' | |||
| colspan="3" |'''GlySpace Meeting (Mike, Raja, Rene, Kiyoko and Frederique)''' | |||
|- | |||
|'''1:30pm''' | |||
| colspan="3" |'''Developer Meeting (Developers)''' | |||
|} | |} | ||
Revision as of 19:24, 7 May 2024
The annual GlyGen All Hands meeting is scheduled for Wednesday and Thursday, June 12th and 13th, 2024. It is an exciting opportunity for all GlyGen collaborators to convene in person and dive into discussions about our future prospects and project plans for the upcoming year.
Program and Information
Meeting Venue
Suite G1 - Innovation Center for Biomedical Informatics, Georgetown University (Map) (Parking)
Day 1 Wednesday June 12 - Suite G1
Day 2 Thursday June 13 - Suite G1
Parking is at Colonial Parking - 2115 and 2121 Wisconsin Ave NW, Washington, DC 20007. The parking ticket will be validated. Contact Jeet Vora.
Accommodation - Closet Hotel to the venue is the The Glover Park Hotel in Glover Park. Other hotels are in Georgetown and Foggy Bottom which are a short ride from the venue.
For entering the building ID is required. In the morning, GW members will be in the courtyard or near the security desk to sign you in and hand out your badges.
For any assistance call Karina (804-868-0809) or (Raja (703-608-9785) or Jeet (202-816-0104)
Travel from DCA or IAD Airport:
The accommodation and meeting venue near/in Georgetown/Glover Park is approximately 7 miles away from Ronald Reagan National Airport (DCA) and 27 Miles from Dulles International Airport (IAD). A taxi ride should take around 20 minutes from DCA and 50 Minutes from IAD.
There is no Metro station near the venue. The closest Metro station is Foggy Bottom (2 miles away). The Metrorail Blue line connects the DCA airport and the Foggy Bottom Station, in direction of Largo Town Center. There is a Silver line metro that directly connects IAD Dulles Airport Station to Foggy Bottom Station, in direction of Largo Town Center) and takes about 60 mins from IAD. (Metro Map , WMATA)
Virtual Meeting
The Zoom Link will be used for the virtual attendees - https://gwu.webex.com/meet/jeetvora
Group Dinner
Group dinner on Day 1 will be at ….There is a … menu for the dinner which will be paid for by GlyGen (details to be finalized).
Alcoholic Drinks - Buy Your Own Drink.
Connecting to the WIFI
GuestNet
GuestNet provides Internet access for visitors, and for other users without NetIDs. The network is also available to current Georgetown students, faculty, staff, and other affiliates.
GU_Visitor
GU_Visitor provides Internet access for visitors at off-campus locations, and for other users without NetIDs. The network is also available to current Georgetown students, faculty, staff, and other affiliates.
GU_Visitor permits access to the Internet only. In order to access Georgetown online services (e.g., Georgetown Google Mail, Box, Canvas), use SaxaNet.
GU_Visitor is password-protected. Users who wish to connect to GU_Visitor should contact an administrative assistant in covered areas for login information.
Eduroam
Georgetown is a member of the Eduroam network, which is comprised of US and international higher education and research institutions.
Access to the Eduroam network is available to visiting students, faculty, and staff from higher education and research institutions that are part of the Eduroam network.
Agenda
Day 1 (Wednesday June 12th) All Hands Meeting
Time (ET) | Agenda | Description | Presenter |
8:30am | Breakfast | ||
9:00am | Welcome |
|
MikeT & Raja (30min) |
9:30am | NIH Remarks | Introductory remarks from NIH Staff | NIH Staff (15 min) |
9:45am | Year 2 progress |
|
MikeT & Raja (30min) |
10:15am | Coffee Break (15min) | ||
10:30am | Portal Year 3 Plan |
|
MikeT (15min) |
10:45pm | Data Year 3 Plan |
|
Raja (15min) |
11:00am | GlyGen Year 4 and Year 5 Plans |
|
MikeT & Raja (15min) |
11:15pm | Open Discussion |
|
All (30min) |
11:45pm | Photo & Lunch break (60min) | ||
12:45pm | Tool game/data |
|
Rene (45 min) |
1:30pm | Subcontract I - Protein Data |
|
Maria (20min) |
1:50pm | Subcontract II - Lit. Mining |
|
Vijay Shanker (20min) |
2:10pm | Subcontract III - Glycan |
|
Nathan (20min) |
2:30pm | GlyGen-PubChem-ChEBI |
|
Nathan, Evan and Karina (20mins) |
2:50pm | Discussion session |
|
All (40 min) |
3:30pm | Coffee break (10mins) | ||
3:40pm | Introduction to GlySpace |
|
Mike and Raja (10min) |
3:50pm | GlyGen's Data Integration Plan for GlyCosmos and GlyConnect data |
|
Urnisha (10min) |
4:20pm | Collaboration plans between GlyGen and GlyCosmos/GlyTouCan |
|
Kiyoko (20min) |
4:40pm | Collaboration plans between GlyGen and GlyConnect/SIB |
|
Frederique (20 min) |
5:00pm | Open discussion |
|
All (20 min) |
5:20pm | Meeting Adjourned | ||
6:30pm | Group Dinner (details to be added) |
Day 2 (Thursday June 13th) All Hands Meeting
8:30am | Breakfast | ||
9:00am | Welcome |
|
MikeT & Raja (5min) |
9:05am | Review Day 1 |
|
Rene (10min) |
9:15am | Outreach |
|
Jeet (20min) |
9:35am | Publication plans |
|
Karina (10min) |
9:45am | Outreach Workshop |
|
Rene (30 min) |
10:15am | Discussion |
|
All (15min) |
10:30am | Coffee break (15 min) | ||
10:45am | Machine learning and literature mining in GlyGen |
|
Robel & Nathan (30min) |
11:15am | How to measure success? |
|
Rene (30min) |
11:45am | Open Discussion |
|
All (15min) |
12:15pm | Lunch break and (60min) | ||
12:45pm | Executive Session with Advisors and NIH Guests, if available (60min) | ||
1:30pm | General Meeting adjourned | ||
1:30pm | GlySpace Meeting (Mike, Raja, Rene, Kiyoko and Frederique) | ||
1:30pm | Developer Meeting (Developers) |