GlyGen 2024 All Hands Meeting: Difference between revisions

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|'''Presenter'''
|'''Presenter'''
|-
|-
| colspan="4" |'''8:30am                                                                                                      Breakfast'''
| colspan="4" |'''8:30am                                                                                                                          <u>Breakfast</u>'''
|-
|-
|'''9:00am'''
|'''9:00am'''
|'''Welcome'''
|'''Welcome'''
* Welcome  
|
* Welcome
* Individual Introduction
* Individual Introduction
* Plan for the Meeting
* Plan for the Meeting
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|'''9:30am'''
|'''9:30am'''
|'''NIH Remarks'''
|'''NIH Remarks'''
* Introductory remarks from NIH Staff
|Introductory remarks from NIH Staff
|NIH Staff (15 min)
|NIH Staff (15 min)
|-
|-
|'''10:20am'''
|'''9:45am'''
|'''Year 2 progress'''
|'''Year 2 progress'''
* Portal (Year 2)
|
*Portal (Year 2)
* Data (Year 2)
* Data (Year 2)
|MikeT & Raja (20min)
|MikeT & Raja (30min)
|-
|-
|'''10:40am'''
|'''10:15am'''
| colspan="3" |                                                                                                '''Coffee break''' (20min)
| colspan="3" |                                                                                                      <u>'''Coffee Break''' (15min)</u>
|-
|-
|'''11:00am'''
|'''10:30am'''
|'''Tool game/data'''
* What tools do we need for GlyGen
* What data/species do we need for GlyGen
|Rene (45 min)
|-
|'''11:45am'''
|'''Portal Year 3 Plan'''
|'''Portal Year 3 Plan'''
|
|
* Portal Plans for Year 3
* Portal Plans for Year 3
|MikeT (20min)
|MikeT (15min)
|-
|-
|'''12:05pm'''
|'''10:45pm'''
|'''Data Year 3 Plan'''
|'''Data Year 3 Plan'''
|
|
* Data Plans for Year 3
* Data Plans for Year 3
|Raja (20min)
|Raja (15min)
|-
|-
|'''10:00am'''
|'''11:00am'''
|'''GlyGen Year 4 and Year 5 Plans'''
|'''GlyGen Year 4 and Year 5 Plans'''
|
|
* Overall aims for GlyGen for Year 4,5
* Overall aims for GlyGen for Year 4 and 5
|MikeT & Raja (20min)
|MikeT & Raja (15min)
|-
|-
|'''12:25pm'''
|'''11:15pm'''
|'''Open Discussion'''
|'''Open Discussion'''
|
|
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|All (30min)
|All (30min)
|-
|-
|'''12:55pm'''
|'''11:45pm'''
| colspan="3" |'''Photo & Lunch break''' (60min)
| colspan="3" |'''Photo & Lunch break''' (60min)
|-
|-
|'''1:55pm'''
|'''12:45pm'''
|'''Tool game/data'''
|
*What tools do we need for GlyGen
* What data/species do we need for GlyGen
|Rene (45 min)
|-
|'''1:30pm'''
|'''Subcontract I - Protein Data'''
|'''Subcontract I - Protein Data'''
|
|
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|Maria (20min)  
|Maria (20min)  
|-
|-
|'''2:25pm'''
|'''1:50pm'''
|'''Subcontract II - Lit. Mining'''
|'''Subcontract II - Lit. Mining'''
|
|
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|Vijay Shanker (20min)
|Vijay Shanker (20min)
|-
|-
|'''2:45pm'''
|'''2:10pm'''
|'''Subcontract III - Glycan'''
|'''Subcontract III - Glycan'''
|
|
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|Nathan (20min)
|Nathan (20min)
|-
|-
|'''3:05pm'''
|'''2:30pm'''
|'''GlyGen-PubChem-ChEBI'''
|'''GlyGen-PubChem-ChEBI'''
|
|
* Current status on GlyGen PubChem collaboration
* Current status on GlyGen PubChem collaboration
* Current status on GlyGen ChEBI collaboration
* Current status on GlyGen ChEBI collaboration
* Year 2 plans
* Year 3 plans
|Nathan, Evan and Karina (20mins)
|Nathan, Evan and Karina (20mins)
|-
|-
|'''3:25pm'''
|'''2:50pm'''
|'''Discussion session'''
|'''Discussion session'''
|
|
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|All (40 min)
|All (40 min)
|-
|-
|'''3:25pm'''
|'''3:30pm'''
| colspan="3" |'''Coffee break''' (15mins)
| colspan="3" |                                                                                                   '''<u>Coffee break</u>''' <u>(10mins)</u>
|-
|-
|'''3:40pm'''
|'''Introduction to GlySpace'''
|
|
|Introduction to GlySpace
* What is GlySpace?
| - What is GlySpace?
* Who is GlySpace Member?
- Who is GlySpace Member?
* GlySpace Mission, Aims and Goals
- GlySpace Mission, Aims and Goals
* GlySpace's Collaboration
- GlySpace's Collaboration
|Mike and Raja (10min)
|Mike and Raja (10min)
|-
|-
|'''3:50pm'''
|'''GlyGen's Data Integration Plan for GlyCosmos and GlyConnect data'''
|
|
|GlyGen's proposal for GlyCosmos and GlyConnect data
* Data Integration Plan from GlyCosmos
| - Data from GlyCosmos
* Data Integration Plan from GlyConnect
- Data from GlyConnect
* Issues and questions
- Issue and questions (ask Nathan)
|Jeet/Urnisha (10min)
|Jeet/Urnisha (10min)
|-
|-
|'''3:40pm'''
|'''4:20pm'''
|'''Collaboration plans between GlyGen and GlyCosmos/GlyTouCan'''
|'''Collaboration plans between GlyGen and GlyCosmos/GlyTouCan'''
|
|
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|Kiyoko (20min)
|Kiyoko (20min)
|-
|-
|'''4:00pm'''
|'''4:40pm'''
|'''Collaboration plans between GlyGen and GlyConnect/SIB'''
|'''Collaboration plans between GlyGen and GlyConnect/SIB'''
|
|
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|Frederique (20 min)
|Frederique (20 min)
|-
|-
|'''4:20pm'''
|'''5:00pm'''
|'''Open discussion'''
|'''Open discussion'''
|
|
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|All (20 min)
|All (20 min)
|-
|-
|'''4:25pm'''
|'''5:20pm'''
| colspan="3" |'''Meeting Adjourned'''
| colspan="3" |'''Meeting Adjourned'''
|-
|'''4:10pm-6pm'''
|'''GlySpace Alliance Meeting'''
|
|'''Raja, Mike, Kiyoko, Frederique, Rene'''
|-
|-
|'''6:30pm'''
|'''6:30pm'''
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|}
|}


=== '''Day 2 (Wed June 13th) General''' ===
=== '''Day 2 (Thursday June 13th) All Hands Meeting''' ===
'''Location - Georgetown'''
{| class="wikitable"
{| class="wikitable"
|'''8:30am'''
| colspan="3" |                                                                                                                                '''<u>Breakfast</u>'''
|-
|'''9:00am'''
|'''9:00am'''
|'''Welcome'''
|'''Welcome'''
|
|
* Welcome  
* Welcome
* Overview of Day 2
|MikeT & Raja (5min)
|MikeT & Raja (5min)
|-
|-
|'''9:05am'''
|'''9:05am'''
|'''Review day 1'''
|'''Review Day 1'''
|
|
* Tasks and To-do's
* Tasks and To-do's
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* Talks
* Talks
* Google Analytics
* Google Analytics
|Jeet (15min)
|Jeet (20min)
|-
|-
|'''10:00am'''
|'''9:35am'''
|'''Publication plans'''
|'''Publication plans'''
|
|
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|Karina (10min)
|Karina (10min)
|-
|-
|'''9:30am'''
|'''9:45am'''
|'''Discussion'''
|
* '''Discussion'''
|All (15min)
|-
|'''10:00am'''
|'''Outreach Workshop'''
|'''Outreach Workshop'''
|
|
* '''Meeting and Conference to attend'''
* Meeting and Conference to attend
* Activities at these meetings and conference
* Activities at these meetings and conference
|All (30 min)
|All (30 min)
|-
|'''10:10am'''
|'''Discussion'''
|
* '''Discussion'''
|All (20min)
|-
|-
|'''10:30am'''
|'''10:30am'''
| colspan="3" |Coffee break (15 min)
| colspan="3" |                                                                                                                       '''Coffee break (15 min)'''
|-
|-
|'''10:45am'''
|'''10:45am'''
|'''Machine learning and literature mining in GlyGen'''(Confirm with Robel and Nathan)
|'''Machine learning and literature mining in GlyGen''' (Confirm with Robel and Nathan)
|
|
* Literature Mining Status
* Literature Mining Status
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|
|
* '''Discussion'''
* '''Discussion'''
|'''All''' (45min)
|'''All''' (15min)
|-
|-
|'''12:00pm'''
|'''11:30pm'''
| colspan="3" |'''Lunch break and''' (60min)
| colspan="3" |'''Lunch break and''' (60min)
|-
|-
|'''12:10pm'''
|'''11:40pm'''
| colspan="3" |'''Executive Session with Advisors and NIH Guests, if available''' (60min)
| colspan="3" |'''Executive Session with Advisors and NIH Guests, if available''' (60min)
|-
|-
|'''1:00pm'''
|'''1:00pm'''
| colspan="3" |'''General Meeting adjourned'''  
| colspan="3" |'''General Meeting adjourned'''  
|-
|'''1:00pm'''
| colspan="3" |'''GlySpace Meeting (Mike, Raja, Rene, Kiyoko and Frederique)'''
|-
|'''1:00pm'''
| colspan="3" |'''Developer Meeting (Developers)'''
|}
|}
'''Day 2 afternoon developers meeting. Agenda ideas are below'''
'''Day 2 afternoon developers meeting. Agenda ideas are below'''

Revision as of 01:42, 7 May 2024

The annual GlyGen All Hands meeting is scheduled for Wednesday and Thursday, June 12th and 13th, 2024. It is an exciting opportunity for all GlyGen collaborators to convene in person and dive into discussions about our future prospects and project plans for the upcoming year.


Program and Information

Meeting Venue

Suite G1 - Innovation Center for Biomedical Informatics, Georgetown University (Map) (Parking)

Day 1 Wednesday June 12 - Suite G1

Day 2 Thursday June 13 - Suite G1

Parking is at Colonial Parking - 2115 and 2121 Wisconsin Ave NW, Washington, DC 20007. The parking ticket will be validated. Contact Jeet Vora.

Accommodation - Closet Hotel to the venue is the The Glover Park Hotel in Glover Park. Other hotels are in Georgetown and Foggy Bottom which are a short ride from the venue.

For entering the building ID is required. In the morning, GW members will be in the courtyard or near the security desk to sign you in and hand out your badges.

For any assistance call Karina (804-868-0809) or (Raja (703-608-9785) or Jeet (202-816-0104)

Travel from DCA or IAD Airport:

The accommodation and meeting venue near/in Georgetown/Glover Park is approximately 7 miles away from Ronald Reagan National Airport (DCA) and 27 Miles from Dulles International Airport (IAD). A taxi ride should take around 20 minutes from DCA and 50 Minutes from IAD.

There is no Metro station near the venue. The closest Metro station is Foggy Bottom (2 miles away). The Metrorail Blue line connects the DCA airport and the Foggy Bottom Station, in direction of Largo Town Center. There is a Silver line metro that directly connects IAD Dulles Airport Station to Foggy Bottom Station, in direction of Largo Town Center) and takes about 60 mins from IAD. (Metro Map , WMATA)

Virtual Meeting

The Zoom Link will be used for the virtual attendees - https://gwu.webex.com/meet/jeetvora

Group Dinner

Group dinner on Day 1 will be at ….There is a … menu for the dinner which will be paid for by GlyGen (details to be finalized).

Alcoholic Drinks - Buy Your Own Drink.

Connecting to the WIFI

GuestNet

GuestNet provides Internet access for visitors, and for other users without NetIDs. The network is also available to current Georgetown students, faculty, staff, and other affiliates.

GU_Visitor

GU_Visitor provides Internet access for visitors at off-campus locations, and for other users without NetIDs. The network is also available to current Georgetown students, faculty, staff, and other affiliates.

GU_Visitor permits access to the Internet only. In order to access Georgetown online services (e.g., Georgetown Google Mail, Box, Canvas), use SaxaNet.

GU_Visitor is password-protected. Users who wish to connect to GU_Visitor should contact an administrative assistant in covered areas for login information.

Eduroam

Georgetown is a member of the Eduroam network, which is comprised of US and international higher education and research institutions.

Access to the Eduroam network is available to visiting students, faculty, and staff from higher education and research institutions that are part of the Eduroam network.

Agenda

Day 1 (Wednesday June 12th) All Hands Meeting

Time (ET) Agenda Description Presenter
8:30am                                                                                                      Breakfast
9:00am Welcome
  • Welcome
  • Individual Introduction
  • Plan for the Meeting
 MikeT & Raja (30min)
9:30am NIH Remarks Introductory remarks from NIH Staff NIH Staff (15 min)
9:45am Year 2 progress
  • Portal (Year 2)
  • Data (Year 2)
 MikeT & Raja (30min)
10:15am       Coffee Break (15min)
10:30am Portal Year 3 Plan
  • Portal Plans for Year 3
 MikeT (15min)
10:45pm Data Year 3 Plan
  • Data Plans for Year 3
 Raja (15min)
11:00am GlyGen Year 4 and Year 5 Plans
  • Overall aims for GlyGen for Year 4 and 5
 MikeT & Raja (15min)
11:15pm Open Discussion
  • Discussion Session
 All (30min)
11:45pm Photo & Lunch break (60min)
12:45pm Tool game/data
  • What tools do we need for GlyGen
  • What data/species do we need for GlyGen
 Rene (45 min)
1:30pm Subcontract I - Protein Data
  • Year 2 summary
  • Year 3 Protein Data Plan
  • Publication/Outreach plans
 Maria (20min)
1:50pm Subcontract II - Lit. Mining
  • Current Progress Overall Lit Mining Plans
  • Year 3 plans
  • Publication /Outreach plans
 Vijay Shanker (20min)
2:10pm Subcontract III - Glycan
  • Year 2 summary
  • Year 3 Glycan Data Plan
  • Publication /Outreach plans
 Nathan (20min)
2:30pm GlyGen-PubChem-ChEBI
  • Current status on GlyGen PubChem collaboration
  • Current status on GlyGen ChEBI collaboration
  • Year 3 plans
 Nathan, Evan and Karina (20mins)
2:50pm Discussion session
  • Discussion
 All (40 min)
3:30pm Coffee break (10mins)
3:40pm Introduction to GlySpace
  • What is GlySpace?
  • Who is GlySpace Member?
  • GlySpace Mission, Aims and Goals
  • GlySpace's Collaboration
 Mike and Raja (10min)
3:50pm GlyGen's Data Integration Plan for GlyCosmos and GlyConnect data
  • Data Integration Plan from GlyCosmos
  • Data Integration Plan from GlyConnect
  • Issues and questions
 Jeet/Urnisha (10min)
4:20pm Collaboration plans between GlyGen and GlyCosmos/GlyTouCan
  • Current status
  • Future plans
  • Grant submission ideas
  • Publications
  • Outreach Plans
 Kiyoko (20min)
4:40pm Collaboration plans between GlyGen and GlyConnect/SIB
  • Current status
  • Future plans
  • Grant submission ideas
  • Publications
  • Outreach Plans
 Frederique (20 min)
5:00pm Open discussion
  • Discussion
 All (20 min)
5:20pm Meeting Adjourned
6:30pm Group Dinner (details to be added)

Day 2 (Thursday June 13th) All Hands Meeting

8:30am Breakfast
9:00am Welcome
  • Welcome
  • Overview of Day 2
 MikeT & Raja (5min)
9:05am Review Day 1
  • Tasks and To-do's
 Rene (10min)
9:15am Outreach
  • Status of Year 2 outreach
  • External Meetings
  • Webinars
  • Workshops
  • Talks
  • Google Analytics
 Jeet (20min)
9:35am Publication plans
  • Overall Publication Plans
 Karina (10min)
9:45am Discussion
  • Discussion
 All (15min)
10:00am Outreach Workshop
  • Meeting and Conference to attend
  • Activities at these meetings and conference
 All (30 min)
10:30am Coffee break (15 min)
10:45am Machine learning and literature mining in GlyGen (Confirm with Robel and Nathan)
  • Literature Mining Status
  • Machine learning ready datasets
  • New Ideas
 Robel & Nathan (30min)
11:15am Open Discussion
  • Discussion
 All (15min)
11:30pm Lunch break and (60min)
11:40pm Executive Session with Advisors and NIH Guests, if available (60min)
1:00pm General Meeting adjourned
1:00pm GlySpace Meeting (Mike, Raja, Rene, Kiyoko and Frederique)
1:00pm Developer Meeting (Developers)

Day 2 afternoon developers meeting. Agenda ideas are below

- Hardware

-- firewall issues for some applications

-- storage getting filled up

-- system down msg

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