GlyGen 2024 All Hands Meeting: Difference between revisions

From GlyGen Wiki
Jump to navigation Jump to search
VisualWikitext
No edit summary
No edit summary
 
(25 intermediate revisions by 3 users not shown)
Line 1: Line 1:
The annual GlyGen All Hands meeting is scheduled for Wednesday and Thursday, June 12th and 13th, 2024. It is an exciting opportunity for all GlyGen collaborators to convene in person and dive into discussions about our future prospects and project plans for the upcoming year.
The annual GlyGen All Hands meeting is scheduled for Wednesday and Thursday, June 12th and 13th, 2024. It is an exciting opportunity for all GlyGen collaborators to convene in person and dive into discussions about our future prospects and project plans for the upcoming year.
[[File:070A6653-F9AC-45ED-84FD-E5571362AD1A.png|thumb|350x350px|center]]
[[File:070A6653-F9AC-45ED-84FD-E5571362AD1A.png|thumb|590x590px|center]]
 
 
 
 
 
 




Line 12: Line 6:
'''Program and Information'''
'''Program and Information'''
==== '''Meeting Venue''' ====
==== '''Meeting Venue''' ====
Suite G1 - Innovation Center for Biomedical Informatics, Georgetown University ([https://www.google.com/maps/place/2115+Wisconsin+Ave+NW,+Washington,+DC+20007/@38.918679,-77.0683324,18z/data=!3m1!4b1!4m6!3m5!1s0x89b7b63a956050a3:0xf040bd3162a4a520!8m2!3d38.918679!4d-77.0683324!16s%2Fg%2F11bw3x1dyr?entry=ttu Map]) ([https://www.google.com/maps/place/Colonial+Parking/@38.918457,-77.0689562,19z/data=!3m1!5s0x89b7b626f2a5495d:0x2697ce1a9e828496!4m6!3m5!1s0x89b7b63aed9da2c1:0x2f866d9d0ca4adfd!8m2!3d38.9186936!4d-77.0681456!16s%2Fg%2F11dynmgnzx?entry=ttu Parking])
Room G1-001, 2115 Wisconsin Ave NW, Georgetown University ([https://www.google.com/maps/place/2115+Wisconsin+Ave+NW,+Washington,+DC+20007/@38.918679,-77.0683324,18z/data=!3m1!4b1!4m6!3m5!1s0x89b7b63a956050a3:0xf040bd3162a4a520!8m2!3d38.918679!4d-77.0683324!16s%2Fg%2F11bw3x1dyr?entry=ttu Map]) ([https://www.google.com/maps/place/Colonial+Parking/@38.918457,-77.0689562,19z/data=!3m1!5s0x89b7b626f2a5495d:0x2697ce1a9e828496!4m6!3m5!1s0x89b7b63aed9da2c1:0x2f866d9d0ca4adfd!8m2!3d38.9186936!4d-77.0681456!16s%2Fg%2F11dynmgnzx?entry=ttu Parking])
[[File:DF5EE52B-D3FD-4382-B769-CAB8250E608E.png|thumb|430x430px]]
Day 1 Wednesday June 12 - Suite G1


Day 2 Thursday June 13 - Suite G1
Day 1 Wednesday June 12 - Room G1-001
 
Day 2 Thursday June 13 - Room G1-001


''Parking is at Colonial Parking - 2115 and 2121 Wisconsin Ave NW, Washington, DC 20007. The parking ticket will be validated. Contact Jeet Vora.''
''Parking is at Colonial Parking - 2115 and 2121 Wisconsin Ave NW, Washington, DC 20007. The parking ticket will be validated. Contact Jeet Vora.''


'''Accommodation''' - Closet Hotel to the venue is the '''The Glover Park Hotel in Glover Park'''. Other hotels are in Georgetown and Foggy Bottom which are a short ride from the venue.
[[File:Parking.jpg|none|thumb|300x300px|Parking ''2115 and 2121 Wisconsin Ave NW, Washington, DC 20007'']]
[[File:Entrance to the building from Wisconsin Ave.jpg|alt=Entrance to the building from Wisconsin Ave|none|thumb|Entrance to the building from Wisconsin Ave]]
[[File:Front of the Building.jpg|none|thumb|Front of the Building]]
[[File:DF5EE52B-D3FD-4382-B769-CAB8250E608E.png|thumb|430x430px]]'''Accommodation''' - Closet Hotel to the venue is the '''The Glover Park Hotel in Glover Park'''. Other hotels are in Georgetown and Foggy Bottom which are a short ride from the venue.


For entering the building '''ID''' is required. In the morning, GW members will be in the courtyard or near the security desk to sign you in and hand out your badges.
For entering the building '''ID''' is required. In the morning, GW members will be in the courtyard or near the security desk to sign you in and hand out your badges.
Line 39: Line 36:
''Alcoholic Drinks - Buy Your Own Drink.''
''Alcoholic Drinks - Buy Your Own Drink.''


=== '''Connecting to the WIFI internet''' ===
=== '''Connecting to the WIFI''' ===
<big><u>GuestNet</u></big>
<big><u>GuestNet</u></big>


Line 60: Line 57:
= '''Agenda''' =
= '''Agenda''' =


====  '''Day 1 (Wednesday June 12th) All Hands Meeting''' ====
=== '''Day 1 (Wednesday June 12th) All Hands Meeting''' ===
{| class="wikitable"
{| class="wikitable"
|'''Time (ET)'''
|'''Time (ET)'''
Line 67: Line 64:
|'''Presenter'''
|'''Presenter'''
|-
|-
| colspan="4" |'''8:30am                                                                                                      Breakfast'''
|'''8:30am'''
| colspan="3" |                                                                                                             '''<u>Breakfast</u>'''
|-
|-
|'''9:00am'''
|'''9:00am'''
|'''Welcome'''
|'''Welcome'''
|
|
* Welcome  
* Welcome
* Individual + Snack Introduction  
* Individual Introduction
* Plan for the Meeting
* Plan for the Meeting
|MikeT & Raja (10min)
|MikeT & Raja (30min)
|-
|-
|'''9:20am'''
|'''9:30am'''
|'''GlyGen Year 3,4,5 Plans'''
|'''NIH Remarks'''
|
|
* Overall aims for GlyGen for Year 3,4,5
* Introductory remarks from NIH Staff
|MikeT & Raja (20min)
|NIH Staff (15 min)
|-
|-
|'''9:40am'''
|'''9:45am'''
|'''Year 2 progress'''
|'''Year 2 progress'''
|
|
* Portal (Year 2)
*Portal (Year 2)
* Data (Year 2)
* Data (Year 2)
|MikeT & Raja (20min)
|MikeT & Raja (30min)
|-
|'''10:00am'''
|'''Tool game/data'''
|
* What tools do we need for GlyGen
* What data/species do we need for GlyGen
|Rene (45 min)
|-
|-
| colspan="4" |'''10:45am'''                                                                                                          '''Coffee break''' (15min)
|'''10:15am'''
| colspan="3" |                                                                                                      <u>'''Coffee Break (15min)'''</u>
|-
|-
|'''11:00am'''
|'''10:30am'''
|'''Portal Year 3 Plan'''
|'''Portal Year 3 Plan'''
|
|
* Portal Plans for Year 3
* Portal Plans for Year 3
|MikeT (20min)
|MikeT (15min)
|-
|-
|'''11:20am'''
|'''10:45pm'''
|'''Data Year 3 Plan'''
|'''Data Year 3 Plan'''
|
|
* Data Plans for Year 3
* Data Plans for Year 3
|Raja (20min)
|Raja (15min)
|-
|-
|'''11:40am'''
|'''11:00am'''
|'''GlyGen Year 4 and Year 5 Plans'''
|
* Overall aims for GlyGen for Year 4 and 5
|MikeT & Raja (15min)
|-
|'''11:15pm'''
|'''Open Discussion'''
|'''Open Discussion'''
|
|
Line 117: Line 115:
|All (30min)
|All (30min)
|-
|-
|'''12:10pm'''
|'''11:45pm'''
| colspan="3" |'''Photo & Lunch break''' (60min)
| colspan="3" |                                                                                                   '''<u>Photo & Lunch break (60min)</u>'''
|-
|-
|'''1:10pm'''
|'''12:45pm'''
|'''Tool game/data'''
|
*What tools do we need for GlyGen
* What data/species do we need for GlyGen
|Rene (45 min)
|-
|'''1:30pm'''
|'''Subcontract I - Protein Data'''
|'''Subcontract I - Protein Data'''
|
|
* Year 2 summary
* Year 2 summary
* Year 3 Protein Data Plan
* Year 3 Protein Data Plan
* Publication/Outreach plans
* Publication
* Outreach plans
|Maria (20min)  
|Maria (20min)  
|-
|-
|'''1:30pm'''
|'''1:50pm'''
|'''Subcontract II - Lit. Mining'''
|'''Subcontract II - Lit. Mining'''
|
|
* Current Progress Overall Lit Mining Plans
* Current Progress Overall Lit Mining Plans
* Year 3 plans
* Year 3 plans
* Publication /Outreach plans
* Publication  
|Vijay Shanker (20min)
* Outreach plans
|Vijay (20min)
|-
|-
|'''1:50pm'''
|'''2:10pm'''
|'''Subcontract III - Glycan'''
|'''Subcontract III - Glycan'''
|
|
* Year 2 summary
* Year 2 summary
* Year 3 Glycan Data Plan
* Year 3 Glycan Data Plan
* Publication /Outreach plans
* Publications
* Outreach plans
|Nathan (20min)
|Nathan (20min)
|-
|-
|'''2:10pm'''
|'''2:30pm'''
|'''GlyGen-PubChem-ChEBI'''
|'''GlyGen-PubChem-ChEBI'''
|
|
* Current status on GlyGen PubChem collaboration
* Current status on GlyGen PubChem collaboration
* Current status on GlyGen ChEBI collaboration
* Current status on GlyGen ChEBI collaboration
* Year 2 plans
* Year 3 plans
|Nathan, Evan and Karina (20mins)
* Recurring Meetings
|Karina, Evan and Tiejun (20mins)
|-
|-
|'''2:40pm'''
|'''2:50pm'''
|'''Discussion session'''
|'''Discussion session'''
|
|
* '''Discussion'''
* Discussion
|All (40 min)
|All (40 min)
|-
|-
|'''3:10pm'''
|'''3:30pm'''
| colspan="3" |'''Coffee break''' (15mins)
| colspan="3" |                                                                                                                                                                                                         '''<u>Coffee break (10mins)</u>'''
|-
|-
|'''3:25pm'''
|'''3:40pm'''
|'''Introduction to GlySpace'''
|
* What is GlySpace?
* Who is GlySpace Member?
* GlySpace Mission, Aims and Goals
* GlySpace's Collaboration
|Mike and Raja (10min)
|-
|'''3:50pm'''
|'''GlyGen's Data Integration Plan for GlyCosmos and GlyConnect data'''
|
* Data Integration Plan from GlyCosmos
* Data Integration Plan from GlyConnect
* Issues and questions
|Urnisha (10min)
|-
|'''4:20pm'''
|'''Collaboration plans between GlyGen and GlyCosmos/GlyTouCan'''
|'''Collaboration plans between GlyGen and GlyCosmos/GlyTouCan'''
|
|
Line 169: Line 195:
* Publications
* Publications
* Outreach Plans
* Outreach Plans
|Kiyoko (10min)
|Kiyoko (20min)
|-
|-
|'''3:35pm'''
|'''4:40pm'''
|'''Collaboration plans between GlyGen and GlyConnect/SIB'''
|'''Collaboration plans between GlyGen and GlyConnect/SIB'''
|
|
Line 179: Line 205:
* Publications
* Publications
* Outreach Plans
* Outreach Plans
|Frederique (10 min)
|Frederique (20 min)
|-
|-
|'''3:45pm'''
|'''5:00pm'''
|'''Open discussion'''
|'''Open discussion'''
|
|
* '''Discussion'''
* Discussion
|All (20 min)
|All (20 min)
|-
|-
|'''4:05pm'''
|'''5:20pm'''
| colspan="3" |'''Meeting Adjourned'''
| colspan="3" |'''Meeting Adjourned'''
|-
|'''4:10pm-6pm'''
|'''GlySpace Alliance Meeting'''
|
|'''Raja, Mike, Kiyoko, Frederique, Rene'''
|-
|-
|'''6:30pm'''
|'''6:30pm'''
| colspan="3" |'''Group Dinner''' ??
| colspan="3" |'''Group Dinner (details to be added)'''
|}
|}


==== '''Day 2 (Wed June 13th) General''' ====
=== '''Day 2 (Thursday June 13th) All Hands Meeting''' ===
{| class="wikitable"
{| class="wikitable"
|'''Time (ET)'''
|'''8:30am'''
|'''Agenda'''
| colspan="3" |                                                                                                                                                                                                                                                                                                                                                                                                 '''<u>Breakfast</u>'''
|'''Description'''
|'''Presenter'''
|-
| colspan="4" |'''8:30am                                                                                                      Breakfast'''
|-
|-
|'''9:00am'''
|'''9:00am'''
|'''Welcome'''
|'''Welcome'''                                                                                                      
|
|
* Welcome  
* Welcome
|MikeT & Raja (5min)
* Overview of Day 2
|MikeT & Raja (5min)                            
|-
|-
|'''9:05am'''
|'''9:05am'''
|'''Review day 1'''
|'''Review Day 1'''
|
|
* Tasks and To-do's
* Tasks and To-do's
Line 229: Line 247:
* Talks
* Talks
* Google Analytics
* Google Analytics
|Jeet (15min)
|Jeet (20min)
|-
|-
|'''9:30am'''
|'''9:35am'''
|'''Outreach discussion'''
|
* '''Discussion'''
|All (30 min)
|-
|'''10:00am'''
|'''Publication plans'''
|'''Publication plans'''
|
|
Line 243: Line 255:
|Karina (10min)
|Karina (10min)
|-
|-
|'''10:10am'''
|'''9:45am'''
|'''Outreach Workshop'''
|
* Meeting and Conference to attend
* Activities at these meetings and conference
|Rene (30 min)
|-
|'''10:15am'''
|'''Discussion'''
|'''Discussion'''
|
|
* '''Discussion'''
* '''Discussion'''
|All (20min)
|All (15min)
|-
|-
|'''10:30am'''
|'''10:30am'''
| colspan="3" |Coffee break (15 min)
| colspan="3" |                                                                                                                                                                                                                                                                                                                                                                         '''<u>Coffee break (15 min)</u>'''
|-
|-
|'''10:45am'''
|'''10:45am'''
Line 258: Line 277:
* Machine learning ready datasets
* Machine learning ready datasets
* New Ideas
* New Ideas
|Robel & Nathan(30min)
|Robel & Nathan (30min)
|-
|-
|'''11:15am'''
|'''11:15am'''
|'''How to measure success?'''
|
* Success Metrics for GlyGen
|Rene (30min)
|-
|'''11:45am'''
|'''Open Discussion'''
|'''Open Discussion'''
|
|
* '''Discussion'''
* '''Discussion'''
|'''All''' (45min)
|All (15min)
|-
|-
|'''12:00pm'''
|'''12:15pm'''
| colspan="3" |'''Lunch break and''' (60min)
| colspan="3" |                                                                                                                     '''<u>Lunch break and (60min)</u>'''
|-
|-
|'''12:10pm'''
|'''12:45pm'''
| colspan="3" |'''Executive Session with Advisors and NIH Guests, if available''' (60min)
| colspan="3" |'''Executive Session with Advisors and NIH Guests, if available''' (60min)
|-
|-
|'''1:00pm'''
|'''1:30pm'''
| colspan="3" |'''General Meeting adjourned'''  
| colspan="3" |                                                                                                                   '''<u>General Meeting adjourned</u>'''
|-
|'''1:30pm'''
| colspan="3" |'''GlySpace Meeting (Mike, Raja, Rene, Kiyoko and Frederique) ''Room G308'''''
|-
|'''1:30pm'''
| colspan="3" |'''Developer Meeting (Developers)'''
|}
 
=== '''Day 3 (Friday June 14th) All Hands Meeting''' ===
{| class="wikitable"
 
!'''8:30am'''
! colspan="3" |'''<u>Breakfast</u>'''
|-
|'''9:00am'''
|'''Welcome'''                                                                                                           
|
* Welcome
* Overview of Day 3                                                       
|MikeT & Raja (5min)
|-
|'''9:05am'''
|GlySpace Meeting
|
* GlySpace Meeting Contd
|(Mike, Raja, Rene, Kiyoko and Frederique)
|-
|'''9:05am'''
|Developers Meeting
|
* Developers Meeting Contd
|All Developers
|-
|'''12:00am'''
| colspan="3" |'''<u>Lunch (60min)</u>'''
|-
|'''1:00PM'''
|Developers Meeting
|
* Developers Meeting Contd
|All Developers
|-
|'''5:00PM'''
| colspan="3" |Meeting Adjourned
|}
|}

Latest revision as of 16:58, 15 May 2024

The annual GlyGen All Hands meeting is scheduled for Wednesday and Thursday, June 12th and 13th, 2024. It is an exciting opportunity for all GlyGen collaborators to convene in person and dive into discussions about our future prospects and project plans for the upcoming year.


Program and Information

Meeting Venue

Room G1-001, 2115 Wisconsin Ave NW, Georgetown University (Map) (Parking)

Day 1 Wednesday June 12 - Room G1-001

Day 2 Thursday June 13 - Room G1-001

Parking is at Colonial Parking - 2115 and 2121 Wisconsin Ave NW, Washington, DC 20007. The parking ticket will be validated. Contact Jeet Vora.

Parking 2115 and 2121 Wisconsin Ave NW, Washington, DC 20007
Entrance to the building from Wisconsin Ave
Entrance to the building from Wisconsin Ave
Front of the Building

Accommodation - Closet Hotel to the venue is the The Glover Park Hotel in Glover Park. Other hotels are in Georgetown and Foggy Bottom which are a short ride from the venue.

For entering the building ID is required. In the morning, GW members will be in the courtyard or near the security desk to sign you in and hand out your badges.

For any assistance call Karina (804-868-0809) or (Raja (703-608-9785) or Jeet (202-816-0104)

Travel from DCA or IAD Airport:

The accommodation and meeting venue near/in Georgetown/Glover Park is approximately 7 miles away from Ronald Reagan National Airport (DCA) and 27 Miles from Dulles International Airport (IAD). A taxi ride should take around 20 minutes from DCA and 50 Minutes from IAD.

There is no Metro station near the venue. The closest Metro station is Foggy Bottom (2 miles away). The Metrorail Blue line connects the DCA airport and the Foggy Bottom Station, in direction of Largo Town Center. There is a Silver line metro that directly connects IAD Dulles Airport Station to Foggy Bottom Station, in direction of Largo Town Center) and takes about 60 mins from IAD. (Metro Map , WMATA)

Virtual Meeting

The Zoom Link will be used for the virtual attendees - https://gwu.webex.com/meet/jeetvora

Group Dinner

Group dinner on Day 1 will be at ….There is a … menu for the dinner which will be paid for by GlyGen (details to be finalized).

Alcoholic Drinks - Buy Your Own Drink.

Connecting to the WIFI

GuestNet

GuestNet provides Internet access for visitors, and for other users without NetIDs. The network is also available to current Georgetown students, faculty, staff, and other affiliates.

GU_Visitor

GU_Visitor provides Internet access for visitors at off-campus locations, and for other users without NetIDs. The network is also available to current Georgetown students, faculty, staff, and other affiliates.

GU_Visitor permits access to the Internet only. In order to access Georgetown online services (e.g., Georgetown Google Mail, Box, Canvas), use SaxaNet.

GU_Visitor is password-protected. Users who wish to connect to GU_Visitor should contact an administrative assistant in covered areas for login information.

Eduroam

Georgetown is a member of the Eduroam network, which is comprised of US and international higher education and research institutions.

Access to the Eduroam network is available to visiting students, faculty, and staff from higher education and research institutions that are part of the Eduroam network.

Agenda

Day 1 (Wednesday June 12th) All Hands Meeting

Time (ET) Agenda Description Presenter
8:30am Breakfast
9:00am Welcome
  • Welcome
  • Individual Introduction
  • Plan for the Meeting
 MikeT & Raja (30min)
9:30am NIH Remarks
  • Introductory remarks from NIH Staff
 NIH Staff (15 min)
9:45am Year 2 progress
  • Portal (Year 2)
  • Data (Year 2)
 MikeT & Raja (30min)
10:15am       Coffee Break (15min)
10:30am Portal Year 3 Plan
  • Portal Plans for Year 3
 MikeT (15min)
10:45pm Data Year 3 Plan
  • Data Plans for Year 3
 Raja (15min)
11:00am GlyGen Year 4 and Year 5 Plans
  • Overall aims for GlyGen for Year 4 and 5
 MikeT & Raja (15min)
11:15pm Open Discussion
  • Discussion Session
 All (30min)
11:45pm Photo & Lunch break (60min)
12:45pm Tool game/data
  • What tools do we need for GlyGen
  • What data/species do we need for GlyGen
 Rene (45 min)
1:30pm Subcontract I - Protein Data
  • Year 2 summary
  • Year 3 Protein Data Plan
  • Publication
  • Outreach plans
 Maria (20min)
1:50pm Subcontract II - Lit. Mining
  • Current Progress Overall Lit Mining Plans
  • Year 3 plans
  • Publication
  • Outreach plans
 Vijay (20min)
2:10pm Subcontract III - Glycan
  • Year 2 summary
  • Year 3 Glycan Data Plan
  • Publications
  • Outreach plans
 Nathan (20min)
2:30pm GlyGen-PubChem-ChEBI
  • Current status on GlyGen PubChem collaboration
  • Current status on GlyGen ChEBI collaboration
  • Year 3 plans
  • Recurring Meetings
 Karina, Evan and Tiejun (20mins)
2:50pm Discussion session
  • Discussion
 All (40 min)
3:30pm Coffee break (10mins)
3:40pm Introduction to GlySpace
  • What is GlySpace?
  • Who is GlySpace Member?
  • GlySpace Mission, Aims and Goals
  • GlySpace's Collaboration
 Mike and Raja (10min)
3:50pm GlyGen's Data Integration Plan for GlyCosmos and GlyConnect data
  • Data Integration Plan from GlyCosmos
  • Data Integration Plan from GlyConnect
  • Issues and questions
 Urnisha (10min)
4:20pm Collaboration plans between GlyGen and GlyCosmos/GlyTouCan
  • Current status
  • Future plans
  • Grant submission ideas
  • Publications
  • Outreach Plans
 Kiyoko (20min)
4:40pm Collaboration plans between GlyGen and GlyConnect/SIB
  • Current status
  • Future plans
  • Grant submission ideas
  • Publications
  • Outreach Plans
 Frederique (20 min)
5:00pm Open discussion
  • Discussion
 All (20 min)
5:20pm Meeting Adjourned
6:30pm Group Dinner (details to be added)

Day 2 (Thursday June 13th) All Hands Meeting

8:30am Breakfast
9:00am Welcome
  • Welcome
  • Overview of Day 2
 MikeT & Raja (5min)
9:05am Review Day 1
  • Tasks and To-do's
 Rene (10min)
9:15am Outreach
  • Status of Year 2 outreach
  • External Meetings
  • Webinars
  • Workshops
  • Talks
  • Google Analytics
 Jeet (20min)
9:35am Publication plans
  • Overall Publication Plans
 Karina (10min)
9:45am Outreach Workshop
  • Meeting and Conference to attend
  • Activities at these meetings and conference
 Rene (30 min)
10:15am Discussion
  • Discussion
 All (15min)
10:30am Coffee break (15 min)
10:45am Machine learning and literature mining in GlyGen
  • Literature Mining Status
  • Machine learning ready datasets
  • New Ideas
 Robel & Nathan (30min)
11:15am How to measure success?
  • Success Metrics for GlyGen
 Rene (30min)
11:45am Open Discussion
  • Discussion
 All (15min)
12:15pm Lunch break and (60min)
12:45pm Executive Session with Advisors and NIH Guests, if available (60min)
1:30pm General Meeting adjourned
1:30pm GlySpace Meeting (Mike, Raja, Rene, Kiyoko and Frederique) Room G308
1:30pm Developer Meeting (Developers)

Day 3 (Friday June 14th) All Hands Meeting

8:30am Breakfast
9:00am Welcome
  • Welcome
  • Overview of Day 3
 MikeT & Raja (5min)
9:05am GlySpace Meeting
  • GlySpace Meeting Contd
 (Mike, Raja, Rene, Kiyoko and Frederique)
9:05am Developers Meeting
  • Developers Meeting Contd
 All Developers
12:00am Lunch (60min)
1:00PM Developers Meeting
  • Developers Meeting Contd
 All Developers
5:00PM Meeting Adjourned
Retrieved from "https://wiki.glygen.org/index.php?title=GlyGen_2024_All_Hands_Meeting&oldid=2996"