Protein details/Glycosylation

The glycosylation section of the Protein information page in GlyGen provides the detailed list of glycosylation sites, reported glycans attached to the protein and predicted sites.

GlyGen portal

Glycosylation is presented in 4 tabs on the Protein information page in GlyGen.

Reported Sites with Glycan

This tab shows a table with the following columns:

Source - GlyGen evidence linking to the databases and papers that provided the glycosylation information
Type - ...
GlyTouCan ID - ...
Glycan Image - Image of the glycan
Residue - Attachment of an oligosaccharide to the nitrogen atom of an Asparagine (Asn) residue of a protein. Eg. Asn294
Note - ...

Reported Sites

Source of information

The following resources provided information that was integrated in GlyGen

UniProtKB - only reported sites information and predicted information is downloaded from UniProtKB

Data access

Data from UniProtKB was downloaded using the UniProt API

Human Glycosylation Sites (UniProtKB)
Mouse Glycosylation Sites (UniProtKB)
Glycosylation Sites - UniCarbKB [Human proteins]
Glycosylation sites - UniCarbKB [Mouse proteins]
Human Glycosylation Sites (RCSB PDB)
Mouse Glycosylation Sites (RCSB PDB)
Glycosylation sites - UniCarbKB [Rat proteins]
Rat Glycosylation Sites (UniProtKB)
Rat Glycosylation Sites (RCSB PDB)
Human Glycosylation Sites (GlyConnect)
Mouse Glycosylation Sites (GlyConnect)
Rat Glycosylation Sites (GlyConnect)
HCV1a Glycosylation Sites (Literature + UniCarbKB)
HCV1a Glycosylation Sites (UniProtKB)
HCV1b Glycosylation Sites (UniProtKB)
SARS-CoV2 Glycosylation Sites (UniProtKB)
Glycosylation Sites - UniCarbKB [SARS CoV 2 proteins]
Human Glycosylation Sites [GPTwiki]
Human Glycosylation Sites [Automatic Literature Mining] [Automatically verified]
SARS-CoV1 Glycosylation Sites (UniProtKB)
Human O-GlcNAc Glycosylation Sites (MCW)
SARS-CoV2 Glycosylation sites
Human Glycosylation Sites UniCarbKB Glycomics Study
SARS-CoV1 Glycosylation Sites (Literature)

Data harmonization

Data filtering