Protein details/Sequence

The Sequence section of the Protein details page in GlyGen displays the canonical protein sequence and offers highlighting of certain annotations such as N-linked Sites, Sequon, Phosphorylation, etc. when the annotation is selected.

Sequence

This section contains the following information:

• Sequence - The canonical protein sequence in FASTA format from the UniProtKB database
• N-Linked Sites -
• O-Linked Sites -
• Variation from mutation -
• Sequon -
• Phosphorylation -
• Glycation -

Source of information

The sequencce data is collected and integrated from UniProtKB, Glycam, and GlyToucan databases.

• UniProtKB - protein FASTA sequences gathered from the UniProtKB database.
• Glycam - Glycan sequences gathered in Glycam IUPAC format for associated glyans.
• GlyTouCan - Glycan sequences in IUPAC extended format for associated glycans (GlyTouCan Accessions).

Data access

The collected data is processed and stored at data.glygen.org in the following datasets:

Homo Sapiens (Human) Datasets

• Human Protein Canonical sequences (UniProtKB; GLY_000002)
• Human Protein Isoform sequences (UniProtKB; GLY_000053)
• Human Protein Sequence Info (UniProtKB; GLY_000398)

Hepatitis C Virus Datasets

• HCV1a Protein Canonical sequences (UniProtKB; GLY_000346)
• HCV1b Protein Canonical sequences (UniProtKB; GLY_000347)
• HCV1a Protein Isoform Sequences (UniProtKB; GLY_000348)
• HCV1b Protein Isoform Sequences (UniProtKB; GLY_000349)
• HCV1a Protein Sequence Info (UniProtKB; GLY_000350)
• HCV1b Protein Sequence Info (UniProtKB; GLY_000351)

Mus musculus (Mouse) Datasets

• Mouse Protein Canonical sequences (UniProtKB; GLY_000012)
• Mouse Protein Isoform sequences (UniProtKB; GLY_000053)
• Mouse Protein Sequence Info (UniProtKB; GLY_000399)

Rattus norvegicus (Rat) datasets

• Rat Protein Canonical sequences (UniProtKB; GLY_000240)
• Rat Protein Isoform sequences (UniProtKB; GLY_000255)
• Rat Protein Sequence Info (UniProtKB; GLY_000400)

SARS Coronavirus datasets

• SARS-CoV1 Protein Isoform sequences (UniProtKB; GLY_000411)
• SARS-CoV2 Protein Isoform sequences (UniProtKB; GLY_000412)
• SARS-CoV1 Protein Canonical sequences (UniProtKB; GLY_000415)
• SARS-CoV2 Protein Canonical sequences (UniProtKB; GLY_000416)
• SARS-CoV1 Protein Sequence Info (UniProtKB; GLY_000400)
• SARS-CoV2 Protein Sequence Info (UniProtKB; GLY_000441)

Glycan Sequence Datasets

• Glycan Sequences Glycam IUPAC (Glycam; GLY_000287)
• Glycan Sequences GlycoCT (GlyTouCan; GLY_000288)
• Glycan Sequences InChI (GlyTouCan, PubChem; GLY_000289)
• Glycan Sequences IUPAC Extended (GlyTouCan; GLY_000290)
• Glycan Sequences SMILES Isomeric (GlyTouCan, PubChem; GLY_000291)
• Glycan Sequences WURCS (GlyTouCan; GLY_000292)

• Glycan sequences Byonic (Glycam; GLY_000559)