Glycan Function Workshop at SfG 2023: Difference between revisions

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The workshop on "Glycan Function Annotation" associated with the annual meeting of the Society for GlycoBiology 2023 will be held on November 4th at Hilton Waikoloa Village Resort, on the big island of Hawaii. The workshop is organized and chaired by Dr. Mike Tiemeyer and Dr. René Ranzinger from the [https://ccrc.uga.edu/ Complex Carbohydrate Research Center] and sponsored by the [https://www.glygen.org/ GlyGen project] with the support of NIH. This workshop follows the [[Glycan Function Workshop 2023|workshop on "Glycan Function"]] held in Padova, Italy in May 2023. While the workshop in Italy was pretty much focused on the bioinformatics and biocuration aspects of glycan function the workshop in Hawaii will focus on the biology and chemistry aspects.
The workshop on "Glycan Function Annotation" associated with the annual meeting of the Society for GlycoBiology 2023 will be held on November 4th at Hilton Waikoloa Village Resort, on the big island of Hawaii. The workshop is organized and chaired by Dr. Mike Tiemeyer and Dr. René Ranzinger from the [https://ccrc.uga.edu/ Complex Carbohydrate Research Center] and sponsored by the [https://www.glygen.org/ GlyGen project] with the support of NIH. This workshop follows the [[Glycan Function Workshop 2023|workshop on "Glycan Function"]] held in Padova, Italy in May 2023. While the workshop in Italy was pretty much focused on the bioinformatics and biocuration aspects of glycan function the workshop in Hawaii will focus on the biology and chemistry aspects
 
=== Organization Committee ===
Dr. Mike Tiemeyer and Dr. René Ranzinger organizing and chairing the workshop. Other people that helped in planning the agenda and organizing the meeting are:
 
* Raja Mazumder ([https://www.glygen.org/ GlyGen])
* Karina Martinez ([https://www.glygen.org/ GlyGen])
* Anna Bighta ([https://ccrc.uga.edu/ Complex Carbohydrate Research Center])


=== Venue ===
=== Venue ===
Line 14: Line 7:


Waikoloa, HI 96738
Waikoloa, HI 96738
=== Travel information ===
'''Airport'''
Kona International Airport (KOA) is a 20-minute (19 miles) car ride from the hotel.
'''Uber & Lyft'''                           
Rides from Kona International Airport range from $21–$37.
'''Taxi'''                                        
Approx. $55-$65 (one way)
'''Parking'''             
Self-Parking: $39/night
Valet Parking: $55/night


=== Schedule ===
=== Schedule ===
Line 47: Line 24:
|Welcome
|Welcome
|
|
|Raja Mazumder
|Mike Tiemeyer & Rene Ranzinger
 
 
Rene Ranzinger
|
|
|
|
Line 68: Line 42:


45 min
45 min
|Q1. How would your resource extract glycan related data from literature or other sources?
|
 
|
 
|
Presentations
|
 
|
Discussions (All attendees)
|Hiren Joshi
|Yukie Akune
 
 
Kristian Axelsen
 
James Urban
|Rene Ranzinger
 
 
Cecilia Arighi
|Vijay Shanker
|-
|-
|10:40
|10:40
Line 101: Line 62:


45 min
45 min
|Q2. What type of glycan related data would be useful to your resource, that you don’t currently have access to?
|
 
|
 
|
Presentations
|
 
|
Discussions (All attendees)
|Maria Martin
|Randi Vita
 
 
Paul Thomas
 
Yan Liu
|Yasunori Yamamoto
 
 
Nathan Edwards
|Emily Bordeleau
|-
|-
|12:00
|12:00
Line 134: Line 82:


45 min
45 min
|Q3. What type of data, that you do have, might enhance glycan related data?
|
 
|
 
|
Presentations
|
 
|
Discussions (All attendees)
|Deepti Jaiswal Kundu
|Ted Groth
 
 
Ten Feizi
 
Kiyoko F. Aoki-Kinoshita
|Frederique Lisacek
 
 
Callum Ives
|Raja Mazumder
|-
|-
|2:05
|2:05
Line 161: Line 96:


45 min
45 min
|Q4. What standards does your resource use for the glycan related annotations?
|
 
|
 
|
Presentations
|
 
|
Discussions (All attendees)
|Mike Tiemeyer
|Adnan Malik
 
 
Kalpana Panneerselvam
 
Susan Bello
|Krishna Khakurel
 
 
Karina Martinez
|Taciana Manso
|-
|-
|3:10
|3:10
|50 min
|50 min
|Break out session: Chair, presenters, reporters and group members meet with their designated group and prepare a summary/presentation for their question (coffee will be provided)
|Coffee Break
|
|
|
|
Line 190: Line 112:
|4:00
|4:00
|60 min
|60 min
|15 min presentations by each group
|Mike Tiemeyer
Raja Mazumder
|
|
|Karina Martinez
|
 
|
 
|
Rene Ranzinger
|
|
|-
|-
|}
|}
====='''Participant Roles'''=====
*Chair - Facilitate discussion sessions
*Chair - Facilitate discussion sessions
*Presenters - Give short ~5 minute presentation on their response to discussion question
*Presenters - Give short ~5 minute presentation on their response to discussion question
Line 217: Line 132:
|-
|-
|1
|1
|GlyGen
|Michael Tiemeyer
|Karina Martinez, Rene Ranzinger, Vijay Shanker, Nathan Edwards, Mike Tiemeyer, Raja Mazumder, Jeet Vora (remote)
|University of Georgia
|-
|-
|2
|2
|Glyco@Expasy
|Rene Ranzinger
|Frederique Lisacek
|University of Georgia
|-
|-
|3
|3
|Immune Epitope Database and Analysis Project (IEDB)
|Karina Martinez
|Randi Vita
|George Washington University
|-
|-
|4
|4
|UniProt/iPTMnet/BioCreative
|Hans H. Wandall
|Cecilia Arighi
|University of Copenhagen
|-
|-
|5
|5
|GlyCosmos
|Jim Paulson
|Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto
|Scripps Institute
|-
|-
|6
|6
|IntAct
|Lance Wells
|Kalpana Panneerselvam
|University of Georgia
|-
|-
|7
|7
|MGI
|Rick Cummings
|Susan Bello (remote)
|Harvard Medical School
|-
|-
|8
|8
|UniProt
|Ten Feizi
|Maria Martin
|Imperial College London
|-
|-
|9
|9
|Microarray curation
|Kelley Moremen
|Ten Feizi, Yan Liu, Yukie Akune
|University of Georgia
|-
|-
|10
|10
|GlycoShape-3D
|Nathan Edwards
|Callum Ives
|Georgetown University
|-
|-
|11
|11
|Glyco.me
|Kiyoko Aoki-Kinoshita
|Hiren Joshi
|Soka University
|-
|-
|12
|12
|GO/PANTHER
|Henrik Clausen
|Paul Thomas
|University of Copenhagen
|-
|-
|13
|13
|Rhea
|Hamed Jafar-Nejad
|Kristian Axelsen, Alan Bridge (remote)
|Baylor
|-
|-
|14
|14
|Glycowork
|Jeff Esko
|James Urban
|UCSD
|-
|-
|15
|15
|ELIBIO Project
|Sean Stowell
|Krishna Khakurel (remote)
|Harvard
|-
|-
|16
|16
|PRIDE
|Karin Hoffmeister
|Deepti Jaiswal Kundu
|Medical College of Wisconsin
|-
|-
|17
|17
|GlycoEnzOnto
|Marie Hollenhorst
|Ted Groth
|Harvard
|-
|-
|18
|18
|ChEBI
|Shinobu Kitazume
|Adnan Malik
|RIKEN
|-
|-
|19
|19
|University of British Columbia
|Mindy Porterfield
|Emily Bordeleau
|University of Georgia
|-
|20
|University of York
|Jon Agirre (remote)
|-
|21
|Glycosciences.de/MonosaccharideDB
|Thomas Lütteke (remote)
|-
|22
|Glycan microarrays
|Akul Mehta (remote)
|-
|23
|IMGT
|Taciana Manso (remote), Sofia Kossida (remote)
|-
|24
|O-GlcNAcAtlas
|Junfeng Ma (remote)
|-
|25
|PubChem
|Evan Bolton (remote)
|-
|26
|VirtualGlycome/SNFG
|Sriram Neelamegham (remote)
|}
|}
=== Travel information ===
'''Airport'''
Kona International Airport (KOA) is a 20-minute (19 miles) car ride from the hotel. 
'''Uber & Lyft'''                           
Rides from Kona International Airport range from $21–$37.
'''Taxi'''                                        
Approx. $55-$65 (one way)
'''Parking'''             
Self-Parking: $39/night
Valet Parking: $55/night
=== Organization Committee ===
Dr. Mike Tiemeyer and Dr. René Ranzinger organizing and chairing the workshop. Other people that helped in planning the agenda and organizing the meeting are:
* Raja Mazumder ([https://www.glygen.org/ GlyGen])
* Karina Martinez ([https://www.glygen.org/ GlyGen])
* Anna Bighta ([https://ccrc.uga.edu/ Complex Carbohydrate Research Center])


=== '''Contact''' ===
=== '''Contact''' ===

Revision as of 17:33, 2 October 2023

The workshop on "Glycan Function Annotation" associated with the annual meeting of the Society for GlycoBiology 2023 will be held on November 4th at Hilton Waikoloa Village Resort, on the big island of Hawaii. The workshop is organized and chaired by Dr. Mike Tiemeyer and Dr. René Ranzinger from the Complex Carbohydrate Research Center and sponsored by the GlyGen project with the support of NIH. This workshop follows the workshop on "Glycan Function" held in Padova, Italy in May 2023. While the workshop in Italy was pretty much focused on the bioinformatics and biocuration aspects of glycan function the workshop in Hawaii will focus on the biology and chemistry aspects

Venue

Hilton Waikoloa Village

69-425 Waikoloa Beach Drive

Waikoloa, HI 96738

Schedule

Time Duration Topic Chair Presenters Reporters Group Members
9:00 15 min Welcome Mike Tiemeyer & Rene Ranzinger
9:15 20 min Glycan Function Overview Mike Tiemeyer
9:35

9:55

20 min

45 min

10:40 15 min Coffee Break
10:55

11:15

20 min

45 min

12:00 60 min Lunch
1:00

1:20

20 min

45 min

2:05


2:25

20 min


45 min

3:10 50 min Coffee Break
4:00 60 min
  • Chair - Facilitate discussion sessions
  • Presenters - Give short ~5 minute presentation on their response to discussion question
  • Reporters - Take notes, prepare and present summary for discussion question
  • Group members - Will join chair, presenters & reporters in preparing summary for their question

Attendees

Resource/Project Attendees
1 Michael Tiemeyer University of Georgia
2 Rene Ranzinger University of Georgia
3 Karina Martinez George Washington University
4 Hans H. Wandall University of Copenhagen
5 Jim Paulson Scripps Institute
6 Lance Wells University of Georgia
7 Rick Cummings Harvard Medical School
8 Ten Feizi Imperial College London
9 Kelley Moremen University of Georgia
10 Nathan Edwards Georgetown University
11 Kiyoko Aoki-Kinoshita Soka University
12 Henrik Clausen University of Copenhagen
13 Hamed Jafar-Nejad Baylor
14 Jeff Esko UCSD
15 Sean Stowell Harvard
16 Karin Hoffmeister Medical College of Wisconsin
17 Marie Hollenhorst Harvard
18 Shinobu Kitazume RIKEN
19 Mindy Porterfield University of Georgia

Travel information

Airport

Kona International Airport (KOA) is a 20-minute (19 miles) car ride from the hotel.

Uber & Lyft                           

Rides from Kona International Airport range from $21–$37.

Taxi                                        

Approx. $55-$65 (one way)


Parking             

Self-Parking: $39/night Valet Parking: $55/night

Organization Committee

Dr. Mike Tiemeyer and Dr. René Ranzinger organizing and chairing the workshop. Other people that helped in planning the agenda and organizing the meeting are:

Contact

For questions about registration or general inquiries, please contact:

Mike Tiemeyer: mtiemeyer@ccrc.uga.edu

Rene Ranzinger: rene@ccrc.uga.edu

Retrieved from "https://wiki.glygen.org/index.php?title=Glycan_Function_Workshop_at_SfG_2023&oldid=2683"