Protein details/Glycosylation: Difference between revisions
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The glycosylation section of the [[Protein information]] page in GlyGen provides the detailed list of glycosylation sites, reported glycans attached to the protein and predicted sites. | The glycosylation section of the [[Protein information]] page in GlyGen provides the detailed list of glycosylation sites, reported glycans attached to the protein and predicted sites. | ||
== GlyGen portal == | ==GlyGen portal== | ||
[[File:Protein_Glycosylation_Screenshot.jpg|thumb|upright|Screenshot of the Glycosylation section on the [[Protein information]] page in GlyGen.]] | [[File:Protein_Glycosylation_Screenshot.jpg|thumb|upright|Screenshot of the Glycosylation section on the [[Protein information]] page in GlyGen.]] | ||
Glycosylation is presented in 4 tabs on the [[Protein information]] page in GlyGen. | Glycosylation is presented in 4 tabs on the [[Protein information]] page in GlyGen. | ||
=== Reported Sites with Glycan === | ===Reported Sites with Glycan=== | ||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
This tab shows a table with the following columns: | This tab shows a table with the following columns: | ||
=== Reported Sites === | *'''Source''' - [[GlyGen evidence linking]] to the databases and papers that provided the glycosylation information | ||
*'''Type''' - ... | |||
*'''GlyTouCan ID''' - ... | |||
*'''Glycan Image''' - Image of the glycan | |||
*'''Residue''' - Attachment of an oligosaccharide to the nitrogen atom of an Asparagine (Asn) residue of a protein. Eg. Asn294 | |||
*'''Note''' - ... | |||
===Reported Sites=== | |||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
== Source of information == | ==Source of information== | ||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
The following resources provided information that was integrated in GlyGen | The following resources provided information that was integrated in GlyGen | ||
== Data access == | *[https://www.uniprot.org/ UniProtKB] - only reported sites information and predicted information is downloaded from UniProtKB | ||
==Data access== | |||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
Data from '''[https://www.uniprot.org/ UniProtKB]''' was downloaded using the UniProt API | Data from '''[https://www.uniprot.org/ UniProtKB]''' was downloaded using the UniProt API | ||
* Human Glycosylation Sites (UniProtKB) | |||
* Mouse Glycosylation Sites (UniProtKB) | |||
* Glycosylation Sites - UniCarbKB [Human proteins] | |||
* Glycosylation sites - UniCarbKB [Mouse proteins] | |||
* Human Glycosylation Sites (RCSB PDB) | |||
* Mouse Glycosylation Sites (RCSB PDB) | |||
* Glycosylation sites - UniCarbKB [Rat proteins] | |||
* Rat Glycosylation Sites (UniProtKB) | |||
* Rat Glycosylation Sites (RCSB PDB) | |||
* Human Glycosylation Sites (GlyConnect) | |||
* Mouse Glycosylation Sites (GlyConnect) | |||
* Rat Glycosylation Sites (GlyConnect) | |||
* HCV1a Glycosylation Sites (Literature + UniCarbKB) | |||
* HCV1a Glycosylation Sites (UniProtKB) | |||
* HCV1b Glycosylation Sites (UniProtKB) | |||
* SARS-CoV2 Glycosylation Sites (UniProtKB) | |||
* Glycosylation Sites - UniCarbKB [SARS CoV 2 proteins] | |||
* Human Glycosylation Sites [GPTwiki] | |||
* Human Glycosylation Sites [Automatic Literature Mining] [Automatically verified] | |||
* SARS-CoV1 Glycosylation Sites (UniProtKB) | |||
* Human O-GlcNAc Glycosylation Sites (MCW) | |||
* SARS-CoV2 Glycosylation sites | |||
* Human Glycosylation Sites UniCarbKB Glycomics Study | |||
* SARS-CoV1 Glycosylation Sites (Literature) | |||
== Data harmonization == | ==Data harmonization== | ||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
== Data filtering == | ==Data filtering== | ||
{{Expand section|small=no}} | {{Expand section|small=no}} |
Revision as of 16:04, 1 November 2021
The glycosylation section of the Protein information page in GlyGen provides the detailed list of glycosylation sites, reported glycans attached to the protein and predicted sites.
GlyGen portal
![](/images/thumb/a/ae/Protein_Glycosylation_Screenshot.jpg/230px-Protein_Glycosylation_Screenshot.jpg)
Glycosylation is presented in 4 tabs on the Protein information page in GlyGen.
Reported Sites with Glycan
This section needs expansion. You can help by adding to it. |
This tab shows a table with the following columns:
- Source - GlyGen evidence linking to the databases and papers that provided the glycosylation information
- Type - ...
- GlyTouCan ID - ...
- Glycan Image - Image of the glycan
- Residue - Attachment of an oligosaccharide to the nitrogen atom of an Asparagine (Asn) residue of a protein. Eg. Asn294
- Note - ...
Reported Sites
This section needs expansion. You can help by adding to it. |
Source of information
This section needs expansion. You can help by adding to it. |
The following resources provided information that was integrated in GlyGen
- UniProtKB - only reported sites information and predicted information is downloaded from UniProtKB
Data access
This section needs expansion. You can help by adding to it. |
Data from UniProtKB was downloaded using the UniProt API
- Human Glycosylation Sites (UniProtKB)
- Mouse Glycosylation Sites (UniProtKB)
- Glycosylation Sites - UniCarbKB [Human proteins]
- Glycosylation sites - UniCarbKB [Mouse proteins]
- Human Glycosylation Sites (RCSB PDB)
- Mouse Glycosylation Sites (RCSB PDB)
- Glycosylation sites - UniCarbKB [Rat proteins]
- Rat Glycosylation Sites (UniProtKB)
- Rat Glycosylation Sites (RCSB PDB)
- Human Glycosylation Sites (GlyConnect)
- Mouse Glycosylation Sites (GlyConnect)
- Rat Glycosylation Sites (GlyConnect)
- HCV1a Glycosylation Sites (Literature + UniCarbKB)
- HCV1a Glycosylation Sites (UniProtKB)
- HCV1b Glycosylation Sites (UniProtKB)
- SARS-CoV2 Glycosylation Sites (UniProtKB)
- Glycosylation Sites - UniCarbKB [SARS CoV 2 proteins]
- Human Glycosylation Sites [GPTwiki]
- Human Glycosylation Sites [Automatic Literature Mining] [Automatically verified]
- SARS-CoV1 Glycosylation Sites (UniProtKB)
- Human O-GlcNAc Glycosylation Sites (MCW)
- SARS-CoV2 Glycosylation sites
- Human Glycosylation Sites UniCarbKB Glycomics Study
- SARS-CoV1 Glycosylation Sites (Literature)
Data harmonization
This section needs expansion. You can help by adding to it. |
Data filtering
This section needs expansion. You can help by adding to it. |