Glycan structure dictionary: Difference between revisions

From GlyGen Wiki
Jump to navigation Jump to search
VisualWikitext
(format)
No edit summary
Line 1: Line 1:
Contains glycan structure terms detected by automatic and manual literature mining. It follows the format from a regular dictionary:http://web.hku.hk/mw/exnotes.html
Glycan Structure Dictionary. Terms represent commonly used words to  describe glycan structures in publications. If any terms is missing please contact us at <nowiki>https://www.glygen.org/contact-us/</nowiki> with the following information: Term name | at least two PMIDs where term is used.


To report any issues or add annotations or new terms to the dictionary contact rsn13@gwu.edu
== List of terms ==
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 N-linked glycans]


==Term: core fucosylated==
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 high-mannose]
'''Definition:''' Modification of the N-glycan core structure with fucose moiety attached at the innermost GlcNAc facilitated by FUT8 enzyme. [MT, RN, <nowiki>https://doi.org/10.1016/bs.acr.2014.11.006</nowiki>].


'''Term reference:''' N/A
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 paucimannose]


'''Synonyms:''' Core Fuc| 6-linked Fuc|Fuca6 to chitobiose core|a6-linked Fuc|a1-6 Fuc|Fuca6 to chitobiose core|Fuc a1-6 to chitobiose core|Fuca6 to internal GlcNAc|Fuc a1-6 to internal GlcNAc
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 hybrid]


'''Function:''' Required for signaling through TCR [PMID: 29434598]. | VGF, PDGFr, and EGFr and TGFbeta receptor dysregulation in Fut8 KO mice [PMID: 17132494]| IgG-Fcg receptor interactions destabilized by core Fuc [PMID: 29062024]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 complex-type glycans]


'''Disease associations:''' Emphysema[MT]|systemic lupus erythematosus[MT]lung cancer[MT]|autoimmunity[MT]|tumor metastasis[MT]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 O-linked glycans]


'''Publication(s):''' [https://pubmed.ncbi.nlm.nih.gov/?term=27678371%7C26514868%7C15538974%7C24914453%7C17049014%7C32078267%7C31268672&size=50 Exact-Match] [https://pubmed.ncbi.nlm.nih.gov/?term=28674882%7C29956878%7C27798819%7C32044029%7C30962950%7C31548313%7C30907281%7C29090617%7C29571940%7C28800497%7C27629418%7C29733746%7C31623829%7C28768188%7C26897254%7C31451706%7C26514868%7C29427759%7C28982386%7C26587313%7C30940702%7C15538974%7C31249452%7C27282921%7C31229844%7C30445455%7C31325506%7C24732908%7C29209018%7C26965517%7C28609658%7C24914453%7C25573275%7C17049014%7C19218400%7C27012207%7C27139574%7C32078267%7C25861849%7C32561391%7C21374780%7C31669139%7C25732060%7C29408166%7C31268672%7C30472795%7C30614075%7C19003000%7C25664929&size=50 Non-Exact-Match]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 T antigen]


'''Term in sentence:''' The approach was validated for selective capture and analysis of core fucosylated N-glycans present in complex glycan mixtures derived from mammalian serum IgG.[PMID:27678371]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 core 2]


'''Wikipedia page:''' N/A
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 core 3]


'''Essentials of Glycobiology:''' N/A
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 core 4]


==Term: sialyl Lewis X==
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 Tn antigen]
'''Definition:''' A sialylated version of Lewis X antigen expressed on cell surfaces with structure Alpha-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-[alpha-L-Fucp-(1->3)]-beta-D-GlcpNAc is alpha-Neup5Ac-(2->3)-beta-D-Galp-(1->4)-[alpha-L-Fucp-(1->3)]-D-GlcpNAc in which the anomeric configuration of the reducing-end N-acetyl-beta-D-glucosamine residue is beta. It is a ligand for selectins. [MESH:2030970,CHEBI:71622,RN]  


'''Term reference:''' [https://glytoucan.org/Structures/Glycans/G00054MO GTC:G00054MO] [https://www.glycoepitope.jp/epitopes/12 GlycoEpitope:EP0012] [https://pubchem.ncbi.nlm.nih.gov/compound/44456859 CID:44456859]  [https://www.ebi.ac.uk/chebi/searchId.do?chebiId=71622 CHEBI:71622]  [https://www.ncbi.nlm.nih.gov/mesh/2030970 MESH:2030970][https://edwardslab.bmcb.georgetown.edu/glycomotif/GM.G00054MO GlycoMotif:GM.G00054MO]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 sialyl-Tn antigen]


'''Synonyms:''' Slex| SLex| SLe^x
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 biantennary]


'''Function:''' Sialyl Lex was shown to be a specific ligand on human leukocytes for vascular E- and P-selectins,and was shown to mediate leukocyte recruitment.[GlycoEpitope:EP0012]|The determinant is also frequently expressed on human cancer cells,and is involved in the adhesion of cancer cells to vascular endothelium and thus contribute to hematogenous metastasis of cancer.[GlycoEpitope:EP0012]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 asialo-biantennary]


'''Disease associations:''' colon cancer[GlycoEpitope:EP0012]|colorectal cancer[GlycoEpitope:EP0012]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 bisialo-biantennary]


'''Publication(s):''' [https://pubmed.ncbi.nlm.nih.gov/?term=12828079%7C8940172%7C10075923%7C19054801%7C9642161&size=50 Exact-Match]  
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 biantennary complex]


'''Term in sentence:''' As sialyl Lewis X is a lignad of the selectin family, it has been proposed that sialyl Lewis X-rich colon cancer cells metastasize to the liver by adhesion to selectins on hepatic endothelial cells.[PMID:12828079]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 bisialo-biantennary complex-type]


'''Wikipedia page:''' [[wikipedia:Sialyl-Lewis_X|Sialyl-Lewis_X]]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 sialylated diantennary]


'''Essentials of Glycobiology:''' [https://www.ncbi.nlm.nih.gov/books/NBK453042/ NBK453042-Chapter14]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 monosialyl-biantennary]


==Term: N-linked glycans==
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 disialylated biantennary]
'''Definition:''' The term used to refer to the carbohydrate portion of N-glycoproteins when attached to a nitrogen from asparagine or arginine side-chains.[CHEBI:59520]


'''Term reference:''' [https://www.ebi.ac.uk/chebi/searchId.do?chebiId=CHEBI:59520 CHEBI:59520]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 disialylated biantennary complex type]


'''Synonyms:''' N/A
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 trisialylated diantennary]


'''Function:''' N-glycans modulate the function of several cell surface proteins which involved in migration, adhesion and which are responsible for regulating myelination.[PMID: 25151374]. Affect transportation of the glycosylated proteins in the Golgi. [PMID: 25151374]|Affects cell-cell interaction, adhesion, expression, proper folding. [PMID: 25151374]. extracellular N-glycans act as key modulators of neuronal uptake of αSacetyl [PMID: 31211781]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 Fully sialylated biantennary N-glycan]


'''Disease associations:''' Rheumatoid arthritis[PMID:17392038]. Type 1 Diabetes[PMID:29146600]. Lung Cancer[PMID: 23766031]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 fucosylated asialo-biantennary]


'''Publication(s):''' [https://pubmed.ncbi.nlm.nih.gov/?term=31211781%7C28384382%7C30305477%7C31364612%7C26899268%7C29945790%7C29652253%7C29723274%7C30962676%7C29778448%7C25325701%7C31100702%7C28898525%7C22944671%7C19277537%7C24473128%7C17957771%7C27554083%7C15189166%7C11269317%7C19577919%7C24303005%7C12042249%7C22191536%7C28324664%7C25965797%7C25434632&size=50 Exact-Match] [https://pubmed.ncbi.nlm.nih.gov/?term=30484244%7C28110657%7C29865036%7C20129637%7C27346875%7C30280442%7C26911286%7C22491358%7C26582281%7C26398792%7C31548313%7C31066275%7C28331984%7C25482090%7C28518173%7C30733536%7C22326428%7C30063825%7C30315103%7C21558494%7C31676555%7C31256374&size=50 Non-Exact-Match]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 fucosylated biantennary]


'''Term in sentence:''' Structural analysis of N-linked glycans in Caenorhabditis elegans.[PMID:12038976]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 fucosylated bisialo-biantennary]


'''Wikipedia page:''' [[wikipedia:N-linked_glycosylation|N-linked glycans]]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 core-fucosylated biantennary]


'''Essentials of Glycobiology:''' [https://www.ncbi.nlm.nih.gov/books/NBK453020/ NBK453020-Chapter 9]
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 core fucosylated biantennary complex-type]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 non-fucosylated biantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 nonfucosylated biantennary N-linked structures]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 triantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 Tri-antennary N-glycans]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 triantennary complex]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 triantennary complex-type]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 triantennary sialylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 triantennary trisialylated fucosylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 fucosylated triantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 non-fucosylated triantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 trisialylated triantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 tetraantennary complex-type]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 tetraantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 tetrasialylated diantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 fucose-containing tetraantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 di-fucosylated tetra-antennary N-glycans]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 core fucosylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 fucosylated N-glycans]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 nonfucosylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 monosialylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 Disialylated fucosylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 trisialylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 trisialylated complex-type oligosaccharide-alditols]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 nonsialylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 desialylated]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 desialylated tetrasaccharide]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 sialylated tetraantennary]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 sialylated complex-type]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 bisecting GlcNAc]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 Lewis X]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 sialyl Lewis X]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 sialyl Lewis X-i]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 3'-sulfo-Lewis x]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 Lewis y]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 sialyl Lewis A]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 disialyl Lewis a]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 3'-sulfo-Lewis a]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 HNK-1]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 VIM-2]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 Forssman Antigen]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 SSEA-3]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 SSEA-1]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 SSEA-4]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 fucosyl GM1]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 N-acetyl GM2]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 N-glycolyl GM2]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 9-O-acetyl GD3]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 9-O-Acetyl Sialic Acid]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 O-mannosyl glycan]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 chitin]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 Chondroitin sulfate]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 heparin]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 heparan sulfate]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 dermatan sulfate]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 keratan sulfate]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 O-GlcNAc]
 
[https://docs.google.com/spreadsheets/d/1tf7NGFvk4Ua4BcAHj5T7UaMab5ebEldUwYm0EgetDl4/edit#gid=1493865519 O-fucose glycans]


<br />
<br />

Revision as of 17:58, 19 November 2020

Glycan Structure Dictionary. Terms represent commonly used words to  describe glycan structures in publications. If any terms is missing please contact us at https://www.glygen.org/contact-us/ with the following information: Term name | at least two PMIDs where term is used.

List of terms

N-linked glycans

high-mannose

paucimannose

hybrid

complex-type glycans

O-linked glycans

T antigen

core 2

core 3

core 4

Tn antigen

sialyl-Tn antigen

biantennary

asialo-biantennary

bisialo-biantennary

biantennary complex

bisialo-biantennary complex-type

sialylated diantennary

monosialyl-biantennary

disialylated biantennary

disialylated biantennary complex type

trisialylated diantennary

Fully sialylated biantennary N-glycan

fucosylated asialo-biantennary

fucosylated biantennary

fucosylated bisialo-biantennary

core-fucosylated biantennary

core fucosylated biantennary complex-type

non-fucosylated biantennary

nonfucosylated biantennary N-linked structures

triantennary

Tri-antennary N-glycans

triantennary complex

triantennary complex-type

triantennary sialylated

triantennary trisialylated fucosylated

fucosylated triantennary

non-fucosylated triantennary

trisialylated triantennary

tetraantennary complex-type

tetraantennary

tetrasialylated diantennary

fucose-containing tetraantennary

di-fucosylated tetra-antennary N-glycans

core fucosylated

fucosylated N-glycans

nonfucosylated

monosialylated

Disialylated fucosylated

trisialylated

trisialylated complex-type oligosaccharide-alditols

nonsialylated

desialylated

desialylated tetrasaccharide

sialylated tetraantennary

sialylated complex-type

bisecting GlcNAc

Lewis X

sialyl Lewis X

sialyl Lewis X-i

3'-sulfo-Lewis x

Lewis y

sialyl Lewis A

disialyl Lewis a

3'-sulfo-Lewis a

HNK-1

VIM-2

Forssman Antigen

SSEA-3

SSEA-1

SSEA-4

fucosyl GM1

N-acetyl GM2

N-glycolyl GM2

9-O-acetyl GD3

9-O-Acetyl Sialic Acid

O-mannosyl glycan

chitin

Chondroitin sulfate

heparin

heparan sulfate

dermatan sulfate

keratan sulfate

O-GlcNAc

O-fucose glycans


Retrieved from "https://wiki.glygen.org/index.php?title=Glycan_structure_dictionary&oldid=1190"