Data release notes: Difference between revisions
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The GlyGen datasets collection is updataed every 2 weeks. | The GlyGen datasets collection is updataed every 2 weeks. | ||
== Version 1.5.36 == | |||
''Main article:'' [[Data release notes/1.5.36]] | |||
Related API version: '''1.5.43''' | |||
This version was released at July 20th, 2020 | |||
# Added O-GlcNAc data extracted from the literature by Stephanie Olivier’s group (GLYDS000518) | |||
# Added germline and somatic variation data that has effect on glycosite (loss of glycosylation site and gain of glycosylation sequon) to the mutation section | |||
# Added the literature extracted glycosite for SARS-CoV1 M protein | |||
# Added glycosylation subtypes to the *_proteoform_glycosylation_sites_uniprotkb.csv | |||
# Added species annotation via subsumption (for human, mouse). Rat and HCV to follow in the next release. | |||
# Added updated GlyConnect data. (additional o-GlcNAc sites) | |||
# Added glycosylation sites through text mining (first iteration). | |||
== Version 1.5.18 == | |||
''Main article:'' [[Data release notes/1.5.18]] | |||
Related API version: '''1.5.26''' | |||
This version was released at April 15th, 2020 | |||
# Added UniProtKB Gene synonyms (search and details) | |||
# Added RefSeq Gene names and synonyms | |||
# Added RefSeq Protein synonyms | |||
# Added UniProtKB Protein synonyms | |||
# Updated the Fasta headers of the protein sequences that now resembles the fasta header of UniProtKB sequences | |||
# Updated BioMuta data with addition of comments that shows which filters were passed | |||
# Created new datasets:mutation literature mining dataset, dbSNP somatic and germline mutations datasets. | |||
# Added GlyGen to Pharos Xref in the protein detail cross-reference section | |||
# Added HCV 1a and 1b, SARS-CoV1 and 2 proteomes | |||
# Added the MIM disease name where DO names were not available | |||
# Updated glycan species annotations. | |||
# Added Human, Mouse, Rat glycosylation data from GlyConnect. | |||
# Added HCV1a glycosylation data from 1 publication. | |||
# Added human glycosylation data from 2 publications. | |||
# Added glycan x-refs to MatrixDB, GlycoEpitope | |||
# Added MatrixDB Protein-GAGs interaction data. (at GlyGen Data) | |||
# Included GlyTouCan-composition accessions. | |||
# Added protein x-refs to GlycoProtDB | |||
# Retired GlycO and GlycomeDB xrefs . | |||
# Added SNFG glycans (at GlyGen Data) | |||
# Added animated GIF and .mp4 video of 3D model of SARS-CoV-2 spike glycoprotein. (at GlyGen Data) | |||
# Updated the synthesized glycan list from Dr. Boons group. | |||
# Included additional 2 FAQs: How do I find a GlyTouCan Boons accession for my glycan composition? and How can I convert my glycan sequence to different formats (e.g IUPAC, WURCS, GlycoCT, LinearCode, etc.)? | |||
==Version 1.0== | ==Version 1.0== | ||
''Main article:'' [[Data release notes/1.0|Data release notes/1.0]] | ''Main article:'' [[Data release notes/1.0|Data release notes/1.0]] | ||
This version was released at | This version was released at Nov 22, 2019 | ||
*Isoform Alignment. | *Isoform Alignment. |
Revision as of 17:02, 27 July 2020
The GlyGen datasets collection is updataed every 2 weeks.
Version 1.5.36
Main article: Data release notes/1.5.36
Related API version: 1.5.43
This version was released at July 20th, 2020
- Added O-GlcNAc data extracted from the literature by Stephanie Olivier’s group (GLYDS000518)
- Added germline and somatic variation data that has effect on glycosite (loss of glycosylation site and gain of glycosylation sequon) to the mutation section
- Added the literature extracted glycosite for SARS-CoV1 M protein
- Added glycosylation subtypes to the *_proteoform_glycosylation_sites_uniprotkb.csv
- Added species annotation via subsumption (for human, mouse). Rat and HCV to follow in the next release.
- Added updated GlyConnect data. (additional o-GlcNAc sites)
- Added glycosylation sites through text mining (first iteration).
Version 1.5.18
Main article: Data release notes/1.5.18
Related API version: 1.5.26
This version was released at April 15th, 2020
- Added UniProtKB Gene synonyms (search and details)
- Added RefSeq Gene names and synonyms
- Added RefSeq Protein synonyms
- Added UniProtKB Protein synonyms
- Updated the Fasta headers of the protein sequences that now resembles the fasta header of UniProtKB sequences
- Updated BioMuta data with addition of comments that shows which filters were passed
- Created new datasets:mutation literature mining dataset, dbSNP somatic and germline mutations datasets.
- Added GlyGen to Pharos Xref in the protein detail cross-reference section
- Added HCV 1a and 1b, SARS-CoV1 and 2 proteomes
- Added the MIM disease name where DO names were not available
- Updated glycan species annotations.
- Added Human, Mouse, Rat glycosylation data from GlyConnect.
- Added HCV1a glycosylation data from 1 publication.
- Added human glycosylation data from 2 publications.
- Added glycan x-refs to MatrixDB, GlycoEpitope
- Added MatrixDB Protein-GAGs interaction data. (at GlyGen Data)
- Included GlyTouCan-composition accessions.
- Added protein x-refs to GlycoProtDB
- Retired GlycO and GlycomeDB xrefs .
- Added SNFG glycans (at GlyGen Data)
- Added animated GIF and .mp4 video of 3D model of SARS-CoV-2 spike glycoprotein. (at GlyGen Data)
- Updated the synthesized glycan list from Dr. Boons group.
- Included additional 2 FAQs: How do I find a GlyTouCan Boons accession for my glycan composition? and How can I convert my glycan sequence to different formats (e.g IUPAC, WURCS, GlycoCT, LinearCode, etc.)?
Version 1.0
Main article: Data release notes/1.0
This version was released at Nov 22, 2019
- Isoform Alignment.
- Homolog Alignment.
- New Usecase added in the quick search.
- Composition Search.
- Go ID search.
- PMID search.
- Batch search on advanced protein and glycan search page.
- Multi-select option for amino acids on advanced glycoprotein search.
- Multi-select option for organisms on advanced glycan search.
- Integrate subsumption browser.