Protein details/Glycosylation: Difference between revisions
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The glycosylation section of the [[Protein information]] page in GlyGen provides the detailed list of glycosylation sites, reported glycans attached to the protein and predicted sites. | The glycosylation section of the [[Protein information]] page in GlyGen provides the detailed list of glycosylation sites, reported glycans attached to the protein and predicted sites. | ||
== GlyGen portal == | ==GlyGen portal== | ||
[[File:Protein_Glycosylation_Screenshot.jpg|thumb|upright|Screenshot of the Glycosylation section on the [[Protein information]] page in GlyGen.]] | [[File:Protein_Glycosylation_Screenshot.jpg|thumb|upright|Screenshot of the Glycosylation section on the [[Protein information]] page in GlyGen.]] | ||
Glycosylation is presented in 4 tabs on the [[Protein information]] page in GlyGen. | Glycosylation is presented in 4 tabs on the [[Protein information]] page in GlyGen. | ||
=== Reported Sites with Glycan === | ===Reported Sites with Glycan=== | ||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
This tab shows a table with the following columns: | This tab shows a table with the following columns: | ||
=== Reported Sites === | *'''Source''' - [[GlyGen evidence linking]] to the databases and papers that provided the glycosylation information | ||
*'''Type''' - ... | |||
*'''GlyTouCan ID''' - ... | |||
*'''Glycan Image''' - Image of the glycan | |||
*'''Residue''' - Attachment of an oligosaccharide to the nitrogen atom of an Asparagine (Asn) residue of a protein. Eg. Asn294 | |||
*'''Note''' - ... | |||
===Reported Sites=== | |||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
== Source of information == | ==Source of information== | ||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
The following resources provided information that was integrated in GlyGen | The following resources provided information that was integrated in GlyGen | ||
== Data access == | *[https://www.uniprot.org/ UniProtKB] - only reported sites information and predicted information is downloaded from UniProtKB | ||
==Data access== | |||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
Data from '''[https://www.uniprot.org/ UniProtKB]''' was downloaded using the UniProt API | Data from '''[https://www.uniprot.org/ UniProtKB]''' was downloaded using the UniProt API | ||
* Human Glycosylation Sites (UniProtKB) | |||
* Mouse Glycosylation Sites (UniProtKB) | |||
* Glycosylation Sites - UniCarbKB [Human proteins] | |||
* Glycosylation sites - UniCarbKB [Mouse proteins] | |||
* Human Glycosylation Sites (RCSB PDB) | |||
* Mouse Glycosylation Sites (RCSB PDB) | |||
* Glycosylation sites - UniCarbKB [Rat proteins] | |||
* Rat Glycosylation Sites (UniProtKB) | |||
* Rat Glycosylation Sites (RCSB PDB) | |||
* Human Glycosylation Sites (GlyConnect) | |||
* Mouse Glycosylation Sites (GlyConnect) | |||
* Rat Glycosylation Sites (GlyConnect) | |||
* HCV1a Glycosylation Sites (Literature + UniCarbKB) | |||
* HCV1a Glycosylation Sites (UniProtKB) | |||
* HCV1b Glycosylation Sites (UniProtKB) | |||
* SARS-CoV2 Glycosylation Sites (UniProtKB) | |||
* Glycosylation Sites - UniCarbKB [SARS CoV 2 proteins] | |||
* Human Glycosylation Sites [GPTwiki] | |||
* Human Glycosylation Sites [Automatic Literature Mining] [Automatically verified] | |||
* SARS-CoV1 Glycosylation Sites (UniProtKB) | |||
* Human O-GlcNAc Glycosylation Sites (MCW) | |||
* SARS-CoV2 Glycosylation sites | |||
* Human Glycosylation Sites UniCarbKB Glycomics Study | |||
* SARS-CoV1 Glycosylation Sites (Literature) | |||
== Data harmonization == | ==Data harmonization== | ||
{{Expand section|small=no}} | {{Expand section|small=no}} | ||
== Data filtering == | ==Data filtering== | ||
{{Expand section|small=no}} | {{Expand section|small=no}} |
Revision as of 16:04, 1 November 2021
The glycosylation section of the Protein information page in GlyGen provides the detailed list of glycosylation sites, reported glycans attached to the protein and predicted sites.
GlyGen portal
Glycosylation is presented in 4 tabs on the Protein information page in GlyGen.
Reported Sites with Glycan
This section needs expansion. You can help by adding to it. |
This tab shows a table with the following columns:
- Source - GlyGen evidence linking to the databases and papers that provided the glycosylation information
- Type - ...
- GlyTouCan ID - ...
- Glycan Image - Image of the glycan
- Residue - Attachment of an oligosaccharide to the nitrogen atom of an Asparagine (Asn) residue of a protein. Eg. Asn294
- Note - ...
Reported Sites
This section needs expansion. You can help by adding to it. |
Source of information
This section needs expansion. You can help by adding to it. |
The following resources provided information that was integrated in GlyGen
- UniProtKB - only reported sites information and predicted information is downloaded from UniProtKB
Data access
This section needs expansion. You can help by adding to it. |
Data from UniProtKB was downloaded using the UniProt API
- Human Glycosylation Sites (UniProtKB)
- Mouse Glycosylation Sites (UniProtKB)
- Glycosylation Sites - UniCarbKB [Human proteins]
- Glycosylation sites - UniCarbKB [Mouse proteins]
- Human Glycosylation Sites (RCSB PDB)
- Mouse Glycosylation Sites (RCSB PDB)
- Glycosylation sites - UniCarbKB [Rat proteins]
- Rat Glycosylation Sites (UniProtKB)
- Rat Glycosylation Sites (RCSB PDB)
- Human Glycosylation Sites (GlyConnect)
- Mouse Glycosylation Sites (GlyConnect)
- Rat Glycosylation Sites (GlyConnect)
- HCV1a Glycosylation Sites (Literature + UniCarbKB)
- HCV1a Glycosylation Sites (UniProtKB)
- HCV1b Glycosylation Sites (UniProtKB)
- SARS-CoV2 Glycosylation Sites (UniProtKB)
- Glycosylation Sites - UniCarbKB [SARS CoV 2 proteins]
- Human Glycosylation Sites [GPTwiki]
- Human Glycosylation Sites [Automatic Literature Mining] [Automatically verified]
- SARS-CoV1 Glycosylation Sites (UniProtKB)
- Human O-GlcNAc Glycosylation Sites (MCW)
- SARS-CoV2 Glycosylation sites
- Human Glycosylation Sites UniCarbKB Glycomics Study
- SARS-CoV1 Glycosylation Sites (Literature)
Data harmonization
This section needs expansion. You can help by adding to it. |
Data filtering
This section needs expansion. You can help by adding to it. |