Protein details/GO annotation: Difference between revisions
Jump to navigation
Jump to search
Amandab2140 (talk | contribs) No edit summary |
Amandab2140 (talk | contribs) |
||
| (4 intermediate revisions by the same user not shown) | |||
| Line 1: | Line 1: | ||
The GO Annotation section of the [[Protein details]] page in GlyGen provides Gene Ontology (GO) terms associated with the protein that fall into three categories: Molecular Function, Cellular Component, and Biological Processes. | The GO Annotation section of the [[Protein details]] page in GlyGen provides Gene Ontology (GO) terms associated with the protein that fall into three categories: Molecular Function, Cellular Component, and Biological Processes. | ||
== GO Annotation == | ==GO Annotation== | ||
[[File:GOscreenshot.jpg|thumb|Screenshot of the GO Annotation section on the [[Protein details]] page in GlyGen.] This section provides the following information:]] | |||
Gene ontology is a precisely defined, common controlled vocabulary for describing the roles of genes and gene products in any organism and includes three categories: Molecular function, Biological process and Cellular component | |||
Only five top level annotations are shown on the details page whereas a link to the QuickGO database is provided for the other annotations for each category. | Only five top level annotations are shown on the details page whereas a link to the QuickGO database is provided for the other annotations for each category. | ||
GO Annotation in GlyGen is presented three categories i.e. Biological Process, Cellular Component, and Molecular Function. | GO Annotation in GlyGen is presented three categories i.e. Biological Process, Cellular Component, and Molecular Function. | ||
'''Molecular function''' represents the elemental activities of a gene product at the molecular level, such as binding or catalysis as described by the Gene Ontology. chemoattractant activity (GO:0042056) | *'''Molecular function''' represents the elemental activities of a gene product at the molecular level, such as binding or catalysis as described by the Gene Ontology. chemoattractant activity (GO:0042056) | ||
'''Cellular component''' is a part of a cell or its extracellular environment where a gene product may be located. Eg. extracellular region (GO:0005576) | *'''Cellular component''' is a part of a cell or its extracellular environment where a gene product may be located. Eg. extracellular region (GO:0005576) | ||
'''Biological process''' is a change or complex of changes on the level of granularity of the cell or organism that is mediated by one or more gene products. Eg. activation of MAPK activity (GO:0000187) | *'''Biological process''' is a change or complex of changes on the level of granularity of the cell or organism that is mediated by one or more gene products. Eg. activation of MAPK activity (GO:0000187) | ||
== Source of information == | |||
==Source of information== | |||
== Data access == | ==Data access== | ||
== Data harmonization == | ==Data harmonization== | ||
== Data filtering == | ==Data filtering== | ||
Latest revision as of 14:37, 7 June 2022
The GO Annotation section of the Protein details page in GlyGen provides Gene Ontology (GO) terms associated with the protein that fall into three categories: Molecular Function, Cellular Component, and Biological Processes.
GO Annotation
Gene ontology is a precisely defined, common controlled vocabulary for describing the roles of genes and gene products in any organism and includes three categories: Molecular function, Biological process and Cellular component
Only five top level annotations are shown on the details page whereas a link to the QuickGO database is provided for the other annotations for each category.
GO Annotation in GlyGen is presented three categories i.e. Biological Process, Cellular Component, and Molecular Function.
- Molecular function represents the elemental activities of a gene product at the molecular level, such as binding or catalysis as described by the Gene Ontology. chemoattractant activity (GO:0042056)
- Cellular component is a part of a cell or its extracellular environment where a gene product may be located. Eg. extracellular region (GO:0005576)
- Biological process is a change or complex of changes on the level of granularity of the cell or organism that is mediated by one or more gene products. Eg. activation of MAPK activity (GO:0000187)